notebook_runner.yml

name: run notebooks

# push or on schedule
on:

  schedule: 
    - cron:  '0 17 * * *'  # Every day at 5pm UTC - early am AuSIS time 

  push: 
  
  workflow_dispatch:
  
    
jobs:
  # This workflow contains a single job called "build"
  compute:
    name: Run notebook and upload result.
    # The type of runner that the job will run on
    runs-on: ubuntu-latest

    # Steps represent a sequence of tasks that will be executed as part of the job
    steps:
    # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
    - uses: actions/checkout@v2
    
    - name: Cache conda
      uses: actions/cache@v1
      env:
      # Increase this value to reset cache if etc/example-environment.yml has not changed
        CACHE_NUMBER: 0
      with:
        path: |
          ~/conda_pkgs_dir
          ~/.cache/pip
            
        key: ubuntu-seismo-conda-${{ env.CACHE_NUMBER }}-${{ hashFiles('.environment.yml') }}

    - name: Miniconda + Cache
      uses: conda-incubator/setup-miniconda@v2
      with:
          miniconda-version: "latest"
          environment-file: environment.yml
          activate-environment: ausis
          python-version: 3.7
          use-only-tar-bz2: true # IMPORTANT: This needs to be set for caching to work properly!


    - name: Install dependencies with conda # (the shell line is needed for conda paths etc)
      shell: bash -l {0}
      run: |
        pip install tables
        conda info 
        conda list

    - name: Run the code
      shell: bash -l {0}
      run: |
        ./notebook_runner.sh &> output_log.txt
        ls -l workdir  # add this to the logs for debugging / monitoring 

    - name: Upload the log files (for now just an artifact)
      if: always()  # upload any output if above fails
      continue-on-error: true  # Usually indicates nothing has change / nothing nees to be committed.
      uses: actions/upload-artifact@v1
      with:
        name: logs
        path: output_log.txt

    - name: Upload the image files 
      uses: actions/upload-artifact@v1
      with:
        name: figures-etc
        path: results
   
    - name: Commit files 
      continue-on-error: true  # Usually indicates nothing has change / nothing nees to be committed.
      run: |
        git config --local user.email "diablo@underworldcode.org"
        git config --local user.name "ProfessorDiablobot"
        git add results/*.png
        git add data/*npz 
        git add results/*.csv
        git commit -m "Updated results: `date` " 

    - name: Push changes
      uses: ad-m/github-push-action@master
      with:
        github_token: ${{ secrets.GITHUB_TOKEN }}