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Examples

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Below are examples of Molecular Nodes being used on different projects, from wet-lab scientists to professional animators.

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Assembly

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Biological Assembly

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Creates a biological assembly by applying rotation and translation matrices to individual chains in the structure. It is created on an individual molecule basis, if assembly instructions are detected when imported.

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Style Spheres requires the material to be set again after the assembly node, as the material is currently lost when joining multiple point clouds.

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Inputs

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NameTypeDescriptionDefault
GeometryGeometryAny geometry to separate into chains and instancerequired
RotationFloatAmount to apply the rotation of the matrix1.0
TranslationFloatAmount to apply the translation of the matrix1.0
assembly_idIntWhich biological assembly to create1
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Outputs

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NameTypeDescriptionDefault
Assembled Chain InstancesGeometryrequired
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Center Assembly

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Move an instanced assembly to the world origin. Some structures are not centred on the world origin, so this node can reset them to the world origin for convenient rotation and translation and animation.

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Inputs

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NameTypeDescriptionDefault
Assembly InstancesGeometryThe instances of an assembly, the result of MN_assemblyrequired
CenterBoolWhether to center the assemblyTrue
TranslationVectorAdditional translation to apply to the centered assembly[0.0, 0.0, 0.0]
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Outputs

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NameTypeDescriptionDefault
Assembly InstancesGeometryThe translated assemblyrequired
Old CentreVectorThe old centre point of the assembly[0.0, 0.0, 0.0]
Transform VectorVectorThe transformation that was applied to the assembly[0.0, 0.0, 0.0]
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CellPack

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Pack Instances

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Inputs

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NameTypeDescriptionDefault
PointsGeometryrequired
SelectionBoolSelection of atoms to apply this node toTrue
CollectionCollectionrequired
FractionFloat1.0
As PointsBoolTrue
Point RadiusFloat0.1
Point MaterialMaterialMN Default
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Outputs

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NameTypeDescriptionDefault
InstancesGeometryrequired
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