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notes on update #22

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cmatKhan opened this issue Nov 8, 2023 · 0 comments
Open

notes on update #22

cmatKhan opened this issue Nov 8, 2023 · 0 comments

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@cmatKhan
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cmatKhan commented Nov 8, 2023

all pages should export data

overall, nested structure where the user chooses to go deeper. start with broad overview, drill down to more info

levels (at tf level)

  1. global view provides an overview that says that "cc is better than others," or whatever
  2. another view that shows integrated network of the TF
    • target list (tf locus tag, gene locus tag, strength)

find spot in site to also search for regulators of a given gene

  • per tf overview page

    • what datasets are available for that tf
      • which datasets are 'best' (for that tf)
        • next level down from this view is justification on why these datasets are recommended (for now, at least as placeholder, use rank recall)
  • all visualizations sizes (size of plots) should take into account scaling, so that for example if a 20 new expression datasets are added, we aren't displaying 20 very small rank response plots horizontally

    • Must set defaults on what displays (eg, for side by side rank response, only 2 of n would display by default, user selects more)
    • to the extent possible, make the layout something the user can manipulate
      • parameterize both the faceting, and also the grouping, so there is an option to show 12 lines on 2 plots or 6 lines on 4
  • GO

    • allow user to click into a "go" page to get more detail
  • exporting data

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