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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export("%ni%")
export(alignTags)
export(benchmark_HTODemux)
export(benchmark_demultiplex1)
export(benchmark_demultiplex2)
export(benchmark_demuxmix_full)
export(benchmark_demuxmix_naive)
export(compute_auc)
export(compute_umap)
export(confusion_stats)
export(demultiplexTags)
export(downsample_mtx_umi)
export(factor_color_opt)
export(get_brewer_set)
export(get_factor_color)
export(get_gradient_color)
export(gg_color_hue)
export(gg_color_hue2)
export(numeric_color_opt)
export(numeric_rgb_range)
export(prob_to_mean_roc)
export(readTags)
export(revComplement)
export(roc_stats)
export(simulateTags)
export(tagCallHeatmap)
export(tagHist)
importFrom(MASS,glm.nb)
importFrom(MASS,rnegbin)
importFrom(Matrix,Matrix)
importFrom(Matrix,rowSums)
importFrom(Matrix,sparseMatrix)
importFrom(ShortRead,readFastq)
importFrom(ShortRead,sread)
importFrom(XVector,subseq)
importFrom(data.table,data.table)
importFrom(dplyr,group_by_at)
importFrom(dplyr,summarize_at)
importFrom(ggExtra,ggMarginal)
importFrom(ggplot2,aes)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,element_text)
importFrom(ggplot2,facet_grid)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_abline)
importFrom(ggplot2,geom_histogram)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,geom_tile)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,guides)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_color_gradientn)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_fill_gradient)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,scale_x_log10)
importFrom(ggplot2,scale_y_sqrt)
importFrom(ggplot2,stat_qq)
importFrom(ggplot2,stat_qq_line)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,theme_classic)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(grid,grid.draw)
importFrom(grid,grid.newpage)
importFrom(gridExtra,arrangeGrob)
importFrom(magrittr,"%>%")
importFrom(stringdist,stringdist)
importFrom(tidyr,pivot_longer)
importFrom(viridis,viridis)