diff --git a/R/get_pLOH_score.R b/R/get_pLOH_score.R index 4d0f0130..04f8cd2b 100644 --- a/R/get_pLOH_score.R +++ b/R/get_pLOH_score.R @@ -4,7 +4,7 @@ #' #' @inheritParams read_copynumber #' @param data a CopyNumber object or a `data.frame` containing at least -#' 'chromosome', 'start', 'end', 'segVal', 'sample' these columns. +#' 'chromosome', 'start', 'end', 'segVal', "minor_cn", 'sample' these columns. #' @param rm_chrs chromosomes to be removed in calculation. Default is sex #' chromosomes (recommended). #' @references diff --git a/docs/reference/get_pLOH_score.html b/docs/reference/get_pLOH_score.html index 41668ec8..dd80aae4 100644 --- a/docs/reference/get_pLOH_score.html +++ b/docs/reference/get_pLOH_score.html @@ -139,7 +139,7 @@

Arg data

a CopyNumber object or a data.frame containing at least -'chromosome', 'start', 'end', 'segVal', 'sample' these columns.

+'chromosome', 'start', 'end', 'segVal', "minor_cn", 'sample' these columns.

rm_chrs diff --git a/man/get_pLOH_score.Rd b/man/get_pLOH_score.Rd index 87d32bd5..529ff75d 100644 --- a/man/get_pLOH_score.Rd +++ b/man/get_pLOH_score.Rd @@ -8,7 +8,7 @@ get_pLOH_score(data, rm_chrs = c("chrX", "chrY"), genome_build = "hg19") } \arguments{ \item{data}{a CopyNumber object or a \code{data.frame} containing at least -'chromosome', 'start', 'end', 'segVal', 'sample' these columns.} +'chromosome', 'start', 'end', 'segVal', "minor_cn", 'sample' these columns.} \item{rm_chrs}{chromosomes to be removed in calculation. Default is sex chromosomes (recommended).}