From eda1d47f18bb68abc6e4c0760aa13642260ecda4 Mon Sep 17 00:00:00 2001
From: Pablo Riesgo Ferreiro <priesgoferreiro@gmail.com>
Date: Mon, 30 May 2022 10:02:22 +0200
Subject: [PATCH] fix tests

---
 tests/test_10.sh | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/tests/test_10.sh b/tests/test_10.sh
index 9bcd8c9..18bb6bb 100644
--- a/tests/test_10.sh
+++ b/tests/test_10.sh
@@ -6,7 +6,7 @@ output=output/test10
 
 nextflow main.nf -profile test,conda --output $output \
 --input_name sample_name \
---input_tumor_bam test_data/SRR8244887.preprocessed.downsampled.bam \
---input_normal_bam test_data/SRR8244836.preprocessed.downsampled.bam
+--input_tumor_bam `pwd`/test_data/SRR8244887.preprocessed.downsampled.bam \
+--input_normal_bam `pwd`/test_data/SRR8244836.preprocessed.downsampled.bam
 
 test -s $output/sample_name/sample_name.mutect2.vcf || { echo "Missing output VCF file!"; exit 1; }
\ No newline at end of file