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custom chromosome #2

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imerelli opened this issue May 4, 2022 · 1 comment
Open

custom chromosome #2

imerelli opened this issue May 4, 2022 · 1 comment

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@imerelli
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imerelli commented May 4, 2022

Hi, your tool is very nice and works smoothly using standard genomes (I'm converting juicer hic files from hg19 to hg38).
But I have custom experiments with an extra chromosome, which clearly must not be changed during h19 to hg38 conversion.
I have an error because I guess the software is not able to manage this.
Is there a workaround to this? Maybe with a small modification of the code?
Ivan
@XiaoTaoWang
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Hi, Ivan, thanks for your interest. Can you share the error message with me?

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@XiaoTaoWang @imerelli