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20-scRNAseq2.Rmd
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20-scRNAseq2.Rmd
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# Single-cell RNA-seq (2) {#scrna2}
## scRNA seq dimension reduction
<iframe width="560" height="315" src="https://www.youtube.com/embed/N5a0FyBjMJ8" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
## Clustering and projections
<iframe width="560" height="315" src="https://www.youtube.com/embed/ysXZgreaPgg" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
## Pseudo time and RNA velocity
<iframe width="560" height="315" src="https://www.youtube.com/embed/emNX_Vm_P2g" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
## Clustering by genotype and CITE seq
<iframe width="560" height="315" src="https://www.youtube.com/embed/6aOUCjgurfg" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>