The histone catalogue makes use of a lot of nice code written by other people. We've made sure that it's all available in the Debian repositories so you only need to:
sudo apt install \
libbio-asn1-entrezgene-perl \
libbio-asn1-entrezgene-perl \
libbio-eutilities-perl \
libbio-eutilities-perl \
libbio-perl-perl \
libbio-perl-perl \
libbio-tools-phylo-paml-perl \
libbio-tools-phylo-paml-perl \
libbio-tools-run-alignment-clustalw-perl \
libbio-tools-run-alignment-tcoffee-perl \
libbio-tools-run-alignment-tcoffee-perl \
libfile-which-perl \
libmodule-scandeps-perl \
libmodule-scandeps-perl \
libmoose-perl \
libmoosex-strictconstructor-perl \
libnamespace-autoclean-perl \
libstatistics-basic-perl \
libtest-output-perl \
libtext-csv-perl \
python3-weblogo \
scons \
texlive-base \
texlive-font-utils \
texlive-fonts-extra \
texlive-latex-base \
texlive-latex-extra \
texlive-latex-recommended \
texlive-publishers \
texlive-science
All code is in a git repository. First install git and then clone the repository locally:
sudo apt install git
git clone https://github.com/af-lab/histone-catalogue.git
cd histone-catalogue
scons update manuscript
If building fails during the step of downloading data, try again during the weekend or night (relative to Eastern Time Zone). In addition, create and use an E-utilities API key.
To create an E-utilities API key, first register for a NCBI account at https://www.ncbi.nlm.nih.gov/ . You can create the API key in the "Settings" page of your NCBI account (after signing in, click on your NCBI username in the upper right corner of any NCBI page). There is an "API Key Management" area. Click the "Create an API Key" button, and copy the resulting key. Then build the manuscript like so:
scons \
--email='[email protected]' \
--api_key='xxxxxxxxxxxxxxxxxxx' \
update manuscript
There should appear a manuscript.pdf and catalogue.pdf document in
the histone-catalogue directory.