Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

chimeric_sam.awk #353

Open
xueqinerer opened this issue Jul 10, 2024 · 0 comments
Open

chimeric_sam.awk #353

xueqinerer opened this issue Jul 10, 2024 · 0 comments
Labels

Comments

@xueqinerer
Copy link

Hi,
When I run juicer.sh, there is an error. The error is as follows:
awk: /data/xueqin/Project/test/test_analyses/test_genome/hic/GPA202407536/2_HQData/juicer/scripts/common/chimeric_sam.awk: line 50: illegal reference to local variable array
awk: /data/xueqin/Project/test/test_Geome_analyses/test_genome/hic/GPA202407536/2_HQData/juicer/scripts/common/chimeric_sam.awk: line 51: illegal reference to local variable array
awk: /data/xueqin/Project/test/test_Geome_analyses/test_genome/hic/GPA202407536/2_HQData/juicer/scripts/common/chimeric_sam.awk: line 164: syntax error at or near [
samtools sort: failed to read header from "-".
1
2

How can I solve this error problem? Thank you.

@xueqinerer xueqinerer added the bug label Jul 10, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
Projects
None yet
Development

No branches or pull requests

1 participant