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datawrangler_diabetes_readmission.flow
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datawrangler_diabetes_readmission.flow
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{
"metadata": {
"version": 1,
"disable_limits": false
},
"nodes": [
{
"node_id": "1ba8c3b9-218d-4f0f-9a16-70f857ea8297",
"type": "SOURCE",
"operator": "sagemaker.s3_source_0.1",
"parameters": {
"dataset_definition": {
"__typename": "S3CreateDatasetDefinitionOutput",
"datasetSourceType": "S3",
"name": "diabetic_data_hospital_visits.csv",
"description": null,
"s3ExecutionContext": {
"__typename": "S3ExecutionContext",
"s3Uri": "s3://sagemaker-us-east-1-<<AWS_ACCOUNT_NUMBER>>/sagemaker/demo-diabetic-datawrangler/dataset_diabetes/diabetic_data_hospital_visits.csv",
"s3ContentType": "csv",
"s3HasHeader": true,
"s3FieldDelimiter": ","
}
}
},
"inputs": [],
"outputs": [
{
"name": "default",
"sampling": {
"sampling_method": "sample_by_limit",
"limit_rows": 50000
}
}
]
},
{
"node_id": "126df6b1-c080-456a-9b84-86d3cf45fadb",
"type": "TRANSFORM",
"operator": "sagemaker.spark.infer_and_cast_type_0.1",
"parameters": {},
"trained_parameters": {
"schema": {
"encounter_id": "long",
"patient_nbr": "long",
"admission_type_id": "long",
"discharge_disposition_id": "long",
"admission_source_id": "long",
"time_in_hospital": "long",
"payer_code": "string",
"medical_specialty": "string",
"num_lab_procedures": "long",
"num_procedures": "long",
"num_medications": "long",
"number_outpatient": "long",
"number_emergency": "long",
"number_inpatient": "long",
"diag_1": "long",
"diag_2": "long",
"diag_3": "long",
"readmitted": "string"
}
},
"inputs": [
{
"name": "default",
"node_id": "1ba8c3b9-218d-4f0f-9a16-70f857ea8297",
"output_name": "default"
}
],
"outputs": [
{
"name": "default"
}
]
},
{
"node_id": "23742b07-da46-4aee-9ac7-3a3d92f5a959",
"type": "SOURCE",
"operator": "sagemaker.s3_source_0.1",
"parameters": {
"dataset_definition": {
"__typename": "S3CreateDatasetDefinitionOutput",
"datasetSourceType": "S3",
"name": "diabetic_data_demographic.csv",
"description": null,
"s3ExecutionContext": {
"__typename": "S3ExecutionContext",
"s3Uri": "s3://sagemaker-us-east-1-<<AWS_ACCOUNT_NUMBER>>/sagemaker/demo-diabetic-datawrangler/dataset_diabetes/diabetic_data_demographic.csv",
"s3ContentType": "csv",
"s3HasHeader": true,
"s3FieldDelimiter": ","
}
}
},
"inputs": [],
"outputs": [
{
"name": "default",
"sampling": {
"sampling_method": "sample_by_limit",
"limit_rows": 50000
}
}
]
},
{
"node_id": "5bc0e695-6639-49a5-b8fc-17e837697eff",
"type": "TRANSFORM",
"operator": "sagemaker.spark.infer_and_cast_type_0.1",
"parameters": {},
"trained_parameters": {
"schema": {
"encounter_id": "long",
"patient_nbr": "long",
"race": "string",
"gender": "string",
"age": "string",
"weight": "string"
}
},
"inputs": [
{
"name": "default",
"node_id": "23742b07-da46-4aee-9ac7-3a3d92f5a959",
"output_name": "default"
}
],
"outputs": [
{
"name": "default"
}
]
},
{
"node_id": "72d9de6e-530e-41f3-a5fa-fcb9ec84777b",
"type": "TRANSFORM",
"operator": "sagemaker.spark.join_tables_0.1",
"name": "joined",
"parameters": {
"left_column": "encounter_id",
"right_column": "encounter_id",
"join_type": "inner"
},
"inputs": [
{
"name": "df",
"node_id": "126df6b1-c080-456a-9b84-86d3cf45fadb",
"output_name": "default"
},
{
"name": "df",
"node_id": "5bc0e695-6639-49a5-b8fc-17e837697eff",
"output_name": "default"
}
],
"outputs": [
{
"name": "default"
}
]
},
{
"node_id": "523036d1-c15d-4a0c-895f-1eacc9473567",
"type": "VISUALIZATION",
"operator": "sagemaker.visualizations.quick_model_0.1",
"parameters": {
"name": "Initial Quick Model",
"label": "readmitted"
},
"inputs": [
{
"name": "df",
"node_id": "72d9de6e-530e-41f3-a5fa-fcb9ec84777b",
"output_name": "default"
}
],
"outputs": [
{
"name": "default"
}
]
},
{
"node_id": "d0a08257-a781-4352-acea-bac1aaf0e595",
"type": "TRANSFORM",
"operator": "sagemaker.spark.manage_columns_0.1",
"parameters": {
"operator": "Drop column",
"drop_column_parameters": {
"column_to_drop": "encounter_id_1"
}
},
"inputs": [
{
"name": "df",
"node_id": "72d9de6e-530e-41f3-a5fa-fcb9ec84777b",
"output_name": "default"
}
],
"outputs": [
{
"name": "default"
}
]
},
{
"node_id": "37956e74-5d80-4881-9e50-e6b8328b8e47",
"type": "TRANSFORM",
"operator": "sagemaker.spark.manage_columns_0.1",
"parameters": {
"operator": "Drop column",
"drop_column_parameters": {
"column_to_drop": "patient_nbr_1"
}
},
"inputs": [
{
"name": "df",
"node_id": "d0a08257-a781-4352-acea-bac1aaf0e595",
"output_name": "default"
}
],
"outputs": [
{
"name": "default"
}
]
},
{
"node_id": "1489ef7a-6298-4088-9095-5118a2295089",
"type": "TRANSFORM",
"operator": "sagemaker.spark.custom_pandas_0.1",
"parameters": {
"code": "# Table is available as variable `df`\ndf.drop_duplicates(subset=['encounter_id_0', 'patient_nbr_0'],keep='first', inplace=True)\n"
},
"inputs": [
{
"name": "df",
"node_id": "37956e74-5d80-4881-9e50-e6b8328b8e47",
"output_name": "default"
}
],
"outputs": [
{
"name": "default"
}
]
},
{
"node_id": "7e4cce60-65bf-49d7-87c0-e4458b95ef4c",
"type": "TRANSFORM",
"operator": "sagemaker.spark.custom_pandas_0.1",
"parameters": {
"code": "# Table is available as variable `df`\nimport time\ndf['eventTime'] = time.time()\n"
},
"inputs": [
{
"name": "df",
"node_id": "1489ef7a-6298-4088-9095-5118a2295089",
"output_name": "default"
}
],
"outputs": [
{
"name": "default"
}
]
},
{
"node_id": "02c44685-b593-482f-8f36-71d6011381cf",
"type": "TRANSFORM",
"operator": "sagemaker.spark.custom_pandas_0.1",
"parameters": {
"code": "# Table is available as variable `df`\n# Table is available as variable `df`\ndf[\"race\"]=df[\"race\"].str.replace(\"?\",\"Other\")\ndf[\"weight\"]=df[\"weight\"].str.replace(\"?\",\"0\")\ndf[\"payer_code\"]=df[\"payer_code\"].str.replace(\"?\",\"0\")\ndf[\"medical_specialty\"]=df[\"medical_specialty\"].str.replace(\"?\",\"Other\")\n"
},
"inputs": [
{
"name": "df",
"node_id": "7e4cce60-65bf-49d7-87c0-e4458b95ef4c",
"output_name": "default"
}
],
"outputs": [
{
"name": "default"
}
]
},
{
"node_id": "20734abb-990d-431b-afe6-885ebc2b3ca7",
"type": "TRANSFORM",
"operator": "sagemaker.spark.handle_missing_0.1",
"parameters": {
"operator": "Impute",
"impute_parameters": {
"column_type": "Numeric",
"numeric_parameters": {
"strategy": "Mean",
"input_column": "diag_1",
"output_column": "diag_1_imputed"
}
}
},
"inputs": [
{
"name": "df",
"node_id": "02c44685-b593-482f-8f36-71d6011381cf",
"output_name": "default"
}
],
"outputs": [
{
"name": "default"
}
]
},
{
"node_id": "e0c8b770-47f9-4a3f-b8f4-f4b6030a591e",
"type": "TRANSFORM",
"operator": "sagemaker.spark.handle_missing_0.1",
"parameters": {
"operator": "Impute",
"impute_parameters": {
"column_type": "Numeric",
"numeric_parameters": {
"strategy": "Mean",
"input_column": "diag_2",
"output_column": "diag_2_imputed"
}
}
},
"inputs": [
{
"name": "df",
"node_id": "20734abb-990d-431b-afe6-885ebc2b3ca7",
"output_name": "default"
}
],
"outputs": [
{
"name": "default"
}
]
},
{
"node_id": "ddc42374-79d6-432d-b893-25bee4c7e042",
"type": "TRANSFORM",
"operator": "sagemaker.spark.handle_missing_0.1",
"parameters": {
"operator": "Impute",
"impute_parameters": {
"column_type": "Numeric",
"numeric_parameters": {
"strategy": "Mean",
"input_column": "diag_3",
"output_column": "diag_3_imputed"
}
}
},
"inputs": [
{
"name": "df",
"node_id": "e0c8b770-47f9-4a3f-b8f4-f4b6030a591e",
"output_name": "default"
}
],
"outputs": [
{
"name": "default"
}
]
},
{
"node_id": "7c3580af-69f8-4730-9a8e-756893557bf7",
"type": "TRANSFORM",
"operator": "sagemaker.spark.encode_categorical_0.1",
"parameters": {
"operator": "One-hot encode",
"one_hot_encode_parameters": {
"invalid_handling_strategy": "Keep",
"drop_last": false,
"output_style": "Columns",
"input_column": "gender",
"output_column": "gender_1hot"
},
"ordinal_encode_parameters": {
"invalid_handling_strategy": "Replace with NaN"
}
},
"trained_parameters": {
"one_hot_encode_parameters": {
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},
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{
"name": "df",
"node_id": "ddc42374-79d6-432d-b893-25bee4c7e042",
"output_name": "default"
}
],
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{
"name": "default"
}
]
},
{
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"type": "TRANSFORM",
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"output_column": "race_1hot"
},
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}
},
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},
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{
"name": "df",
"node_id": "7c3580af-69f8-4730-9a8e-756893557bf7",
"output_name": "default"
}
],
"outputs": [
{
"name": "default"
}
]
},
{
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"type": "TRANSFORM",
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},
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{
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"output_name": "default"
}
],
"outputs": [
{
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}
]
},
{
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}
}
},
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{
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],
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{
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"type": "TRANSFORM",
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{
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{
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{
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{
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"type": "VISUALIZATION",
"operator": "sagemaker.visualizations.quick_model_0.1",
"parameters": {
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"label": "readmitted_parser_2"
},
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}
]
}