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Missing PAF file format for the overlaps in the wrapper #1196

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mthang opened this issue Feb 25, 2022 · 4 comments
Open

Missing PAF file format for the overlaps in the wrapper #1196

mthang opened this issue Feb 25, 2022 · 4 comments

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@mthang
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mthang commented Feb 25, 2022

<param type="data" name="overlaps" format="sam,tabular" label="Overlaps"/>

There is a missing file format for this Racon Wrapper. The input of the overlap requires PAF file format and written in the Antibiotic resistance detection GTN under the RACON section .

bgruening added a commit that referenced this issue Feb 25, 2022
@bgruening
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Hi @mthang, I have fixed that now. Thanks for reporting.

@mthang
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mthang commented Mar 1, 2022

hi @bgruening , thank you for the quick fix. Would it be possible to update this wrapper on the GA toolshed when you can. I am going to close this issue. Thank you for your time and effort. Cheers

@mthang mthang closed this as completed Mar 1, 2022
@bgruening
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Is it not updated?

@mthang
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mthang commented Mar 1, 2022

The latest revision of racon wrapper on the toolshed is 5:7c847ec300b8 and dated 5(2021-09-12). Then, I browsed the repository tips file on the toolshed from the Repository Action drop down menu. This line remains the same (aka without the PAF file added).

@mthang mthang reopened this Mar 1, 2022
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