From 0bd92662e3ba251f180b4022bd3693328625a1c4 Mon Sep 17 00:00:00 2001
From: "Charles E. Grant" <cegrant@uw.edu>
Date: Sat, 28 Dec 2024 10:54:22 -0800
Subject: [PATCH] Update crux-toolkit to 4.2 (#51986)

---
 recipes/crux-toolkit/meta.yaml | 85 ++++++++++++++++++++--------------
 1 file changed, 49 insertions(+), 36 deletions(-)

diff --git a/recipes/crux-toolkit/meta.yaml b/recipes/crux-toolkit/meta.yaml
index 04ea9d0b8ce6a..cf96b461e5ece 100644
--- a/recipes/crux-toolkit/meta.yaml
+++ b/recipes/crux-toolkit/meta.yaml
@@ -1,36 +1,49 @@
-{% set version = "4.1" %}
-
-package:
-  name: crux-toolkit
-  version: {{ version }}
-
-source:
-  - url: https://noble.gs.washington.edu/crux-downloads/crux-{{ version }}/crux-{{ version }}.Linux.x86_64.zip  # [linux]
-    sha256: c056f1e632dfaf8d0c6f6769fbdaf78eef6fd586a6b732d88ad0c01fe2da077d  # [linux]
-  - url: https://noble.gs.washington.edu/crux-downloads/crux-{{ version }}/crux-{{ version }}.Darwin.x86_64.zip  # [osx]
-    sha256: 9f7b060e67ec250e4c2a10b783eb1777497ec0d1151e5bc9630f67f411b595ac  # [osx]
-
-build:
-  number: 2
-  script: "mkdir -p $PREFIX/bin; chmod a+x bin/*; cp bin/* $PREFIX/bin"
-
-requirements:
-  build:
-    # both needed as run-time dependencies
-    - {{ compiler('c') }}
-    - {{ compiler('cxx') }}
-
-test:
-  commands:
-    - crux version 2> /dev/null | grep -q 'Crux version'
-
-about:
-  home: http://crux.ms
-  summary: A cross-platform suite of analysis tools for interpreting protein mass spectrometry data
-  license: Apache-2.0
-  license_family: Apache
-  dev_url: https://github.com/crux-toolkit/crux-toolkit
-
-extra:
-  skip-lints:
-    - should_not_be_noarch_source
+{% set version = "4.2" %}
+
+package:
+  name: crux-toolkit
+  version: {{ version }}
+
+source:
+  - url: https://noble.gs.washington.edu/crux-downloads/crux-{{ version }}/crux-{{ version }}.Linux.x86_64.zip  # [linux]
+    sha256: b5c1a02416f0220beb6106e12a7b330932dec396291ae364af8f2153a1e1655d  # [linux]
+  - url: https://noble.gs.washington.edu/crux-downloads/crux-{{ version }}/crux-{{ version }}.Darwin.x86_64.zip  # [osx]
+    sha256: 5f1fb9124391cec30608740fdce3aea7fcb3f19330531ea90f6ecf81b8583d00  # [osx]
+
+build:
+  number: 0
+  script: "mkdir -p $PREFIX/bin; chmod a+x bin/*; cp bin/* $PREFIX/bin"
+  run_exports:
+    - {{ pin_subpackage('crux-toolkit', max_pin="x")}}
+
+  binary_relocation: False
+  detect_binary_files_with_prefix: False
+  missing_dso_whitelist:
+    - /lib64/libpthread.so.0
+    - /lib64/libgomp.so.6
+    - /lib64/libstdc.so.6
+    - /lib64/libm.so.6
+    - /lib64/libgcc_s.so.1
+    - /lib64/libc.so.6
+
+requirements:
+  run:
+test:
+  commands:
+    - export LD_LIBRARY_PATH=/opt/conda/lib64 crux version
+
+
+about:
+  home: http://crux.ms
+  summary: A cross-platform suite of analysis tools for interpreting protein mass spectrometry data
+  license: Apache-2.0
+  license_family: Apache
+  dev_url: https://github.com/crux-toolkit/crux-toolkit
+
+extra:
+  recipe-maintainers:
+    - CharlesEGrant
+    - wsnoble
+    - acquayefrank
+  skip-lints:
+    - should_be_noarch_generic