NAMESPACE

# Generated by roxygen2: do not edit by hand

S3method(print,treeWAS)
export(.getFixed)
export(.is.even)
export(.is.integer0)
export(.is.odd)
export(.substrLeft)
export(.substrRight)
export(.switch.phen)
export(asr)
export(assoc.test)
export(beeswarmPlot)
export(coalescent.sim)
export(coalescent.tree.sim)
export(fwd.coalescent.sim)
export(fwd.phen.sim)
export(fwd.snp.sim)
export(get.ancestral.pars)
export(get.assoc.scores)
export(get.binary.snps)
export(get.fitch.n.mts)
export(get.original.loci)
export(get.score3)
export(get.sig.snps)
export(get.tip.order)
export(get.unique.matrix)
export(ggplotbg)
export(heatmap.DNAbin)
export(keepFirstN)
export(keepLastN)
export(manhattan.plot)
export(memfree)
export(pair.tests)
export(phen.sim)
export(plot_phen)
export(plot_prob_phen)
export(plot_sig_snps)
export(read.CFML)
export(removeFirstN)
export(removeLastN)
export(selectBiallelicSNP)
export(set.args)
export(simTest)
export(simultaneous.test)
export(simultaneous.test.epi)
export(snp.sim)
export(snp.sim.Q)
export(subsequent.test)
export(table.matrix)
export(terminal.test)
export(terminal.test.epi)
export(tree.reconstruct)
export(treeWAS)
export(write.treeWAS)
import(adegenet)
import(ape, except = zoom)
import(ggplot2)
importFrom(Hmisc,all.is.numeric)
importFrom(ade4,dudi.pca)
importFrom(adegenet,transp)
importFrom(ape,read.dna)
importFrom(beeswarm,beeswarm)
importFrom(grDevices,col2rgb)
importFrom(grDevices,dev.off)
importFrom(grDevices,heat.colors)
importFrom(grDevices,pdf)
importFrom(grDevices,rgb)
importFrom(graphics,arrows)
importFrom(graphics,axis)
importFrom(graphics,barplot)
importFrom(graphics,box)
importFrom(graphics,hist)
importFrom(graphics,image)
importFrom(graphics,lines)
importFrom(graphics,mtext)
importFrom(graphics,par)
importFrom(graphics,plot.new)
importFrom(graphics,points)
importFrom(graphics,rect)
importFrom(graphics,text)
importFrom(graphics,title)
importFrom(phangorn,acctran)
importFrom(phangorn,ancestral.pml)
importFrom(phangorn,as.phyDat)
importFrom(phangorn,fitch)
importFrom(phangorn,midpoint)
importFrom(phangorn,pace)
importFrom(phangorn,phyDat)
importFrom(phangorn,pml)
importFrom(phangorn,pratchet)
importFrom(phytools,anc.ML)
importFrom(phytools,fastAnc)
importFrom(pryr,mem_used)
importFrom(pryr,object_size)
importFrom(scales,rescale)
importFrom(stats,anova)
importFrom(stats,as.formula)
importFrom(stats,chisq.test)
importFrom(stats,cor)
importFrom(stats,density)
importFrom(stats,dist)
importFrom(stats,ecdf)
importFrom(stats,fisher.test)
importFrom(stats,ftable)
importFrom(stats,glm)
importFrom(stats,lm)
importFrom(stats,mantelhaen.test)
importFrom(stats,p.adjust)
importFrom(stats,quantile)
importFrom(stats,residuals)
importFrom(stats,rexp)
importFrom(stats,rnorm)
importFrom(stats,rpois)
importFrom(utils,combn)
importFrom(utils,str)
importFrom(utils,write.csv)
importFrom(utils,write.table)