CondaPackError: Files managed by conda were found to have been deleted/overwritten in the following packages: #197
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@PolarisRisingWar Can you provide some reproducible commands to reproduce this? e.g.: `conda install conda-forge::conda-pack && conda create --name testenv packageA packageB && conda-pack --name testenv -o testenv.tar.gz`` Thanks |
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I used |
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I'm having a similar issue with Python 3.10 and conda-pack 0.7.0. It listed conda-pack, pip, and wheel as the offending packages. For now I worked around it with |
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I observe this on 3.9 as well |
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it looks like upgrading to the latest version of conda fixes the issue |
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I also have this issue with following yaml file: name: test_env
channels:
- pytorch
- conda-forge
- defaults
- anaconda
dependencies:
- pip=22.1.2
- python=3.10
- cudatoolkit=11.6.0
- numpy=1.22.4
- pytorch=1.12.1=py3.10_cuda11.6_cudnn8_0
- torchaudio=0.12.1=py310_cu116
- torchvision=0.13.1=py310_cu116
- conda-pack==0.7.0
- six=1.15.0
- pillow=9.4.0
- urllib3=1.26.15
- pip:
- PyYAML==6.0
- grpcio==1.49.1
- grpcio-tools==1.49.1
- grpcio-health-checking==1.49.1
- grpcio-reflection==1.49.1
- onnx==1.14.0
- onnx-simplifier>=0.4.13
- onnxruntime-gpu==1.14.0
- opencv-python==4.6.0.66
- pandas==1.3.5
- pythonnet==3.0.1
- scikit-learn==1.0.2
- scipy==1.7.3
- shapely==1.8.4
- tensorboard==2.12.0
- tqdm==4.64.0
- tensorflow==2.12.0
- segmentation-models==1.0.1
- Nuitka==0.6.19
- numba==0.55.2
- cupy-cuda11x
- tf2onnx==1.14.0
- seaborn==0.12.0
- matplotlib==3.5.3
- pystray==0.19.4
- customtkinter==5.1.2
- tabulate==0.9.0
- ultralytics==8.0.145
- black==23.3.0
- pytest==7.3.1Create env with conda env create -f "environment.yaml"Then activate the environment and try to pack it conda activate test_env
conda-pack -p "C:\Users\XXXYourUserXXX\Miniconda3\envs\test_env" -o test_env.tar.gz --n-threads -1 --compress-level 6 --forceWhen I add the --ignore-missing-files flag, it works, but the resulting .tar.gz is roughly 100 MB smaller. Edit: I can confirm now, that the smaller .tar.gz is missing files, resulting in a not correctly working application. Edit 2: If I run following before I try to package the environment it seems to work more reliably. conda install numpy=1.22.4 -c conda-forge |
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I've using this command:
conda pack -n envesca -o (mypath)/condapacks/envesca.tar.gzAnd I met this error message:
Python 3.6.13
Ubuntu
This is my conda list:
And this is my pip list:
I wonder how could I solve this bug? Should I use conda or pip to uninstall and install numpy?
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