add tutorial on contact matrices #52
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Co-authored-by: Sebastian Funk <[email protected]>
Co-authored-by: Sebastian Funk <[email protected]>
Co-authored-by: Sebastian Funk <[email protected]>
Co-authored-by: Sebastian Funk <[email protected]>
Co-authored-by: Sebastian Funk <[email protected]>
Co-authored-by: Sebastian Funk <[email protected]>
Co-authored-by: Sebastian Funk <[email protected]>
And tidy up package usage in setup
From 'transmission heterogeneity' to 'geographical heterogeneity'
Co-authored-by: Sebastian Funk <[email protected]>
adapted from https://github.com/epiverse-trace/casestudies/blob/more-cases/casestudies/casestudy_03/casestudy_03.qmd @avallecam the data file is an incidence data set created from a cleaned linelist object (code in above link) that can be used for the early tasks challenge as part of epiverse-trace#54
Ebola case study challenged added in response to epiverse-trace#54
moving some contact matrix content from `simulating-transmission.Rmd` to`contact-matrices.Rmd`
added section on socialmixr, including how to download surveys.
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Co-authored-by: Sebastian Funk <[email protected]>
This PR adds a tutorial on contact matrices and fixes #47 #30
Any feedback on this draft is welcome. I think to highlight the importance of normalisation we need a worked example and/or exercise of some kind. Is this the place to put a final size or reff conversion worked example? Or will these feature in a different tutorial? Or if there are any other suggestions let me know.