Delete Temporary mat files at the end of run_SINGE_GLG_test.sh

[atuldeshpande]

Issue: Depending on the data size, large TempMat*.mat files are created during SINGE_GLG_Test, which could overrun user's storage budget leading to subsequent jobs being held.
Fix: We should include the line
eval "rm Temp*.mat"
near the end of run_SINGE_GLG_Test.sh

EDIT: The rm should be more targeted, especially if the storage is shared, with only Temp_<ID>.mat to be deleted.

[agitter]

The end of currently has SINGE_GLG_Test.m

SINGE/code/SINGE_GLG_Test.m

Line 92 in 9c59a1e

delete(['TempMat' '_' num2str(params.ID) '.mat']);

Is that line not working?

[atuldeshpande]

I think there's a case to be made to clean up if for any reason a job fails, not reaching this point in MATLAB.

[agitter]

I agree that we should still delete temporary files even if a job fails. However, is it possible to do that in a way that also cleans up the temporary files if the job fails when run through MATLAB instead of the shell script? For example, can we catch errors in this function and delete the temporary file if there is an error?

[agitter]

Do we also need to delete the file TempMat.mat that is created here?

SINGE/code/parseParams.m

Lines 76 to 86 in 9c59a1e

	function y = isfilecomp(x)
	if (exist([x '.mat'], 'file') == 2)
	y = 1;
	copyfile([x '.mat'],'TempMat.mat');
	elseif (exist(x, 'file') == 2)
	y = 1;
	copyfile(x,'TempMat.mat');
	else
	y = 0;
	end
	end