diff --git a/rules/blast.smk b/rules/blast.smk index 7f49885..98212e7 100644 --- a/rules/blast.smk +++ b/rules/blast.smk @@ -12,11 +12,12 @@ def concatenate_tables(input, output, sep = "\s+"): # Prepare taxonomy annotation tables. rule prepare_taxonomy_data: - input: config["names"], config["nodes"], config["division"] - output: + input: + config["names"], config["nodes"], config["division"] + output: expand("taxonomy/{file}.csv", file = ["names", "nodes", "division"]) - wrapper: - "https://raw.githubusercontent.com/avilab/virome-wrappers/master/prepare_taxonomy_data" + wrapper: + "https://raw.githubusercontent.com/avilab/virome-wrappers/master/prepare_taxonomy_data" # Blastn, megablast and blastx input, output, and params keys must match commandline blast option names. Please see https://www.ncbi.nlm.nih.gov/books/NBK279684/#appendices.Options_for_the_commandline_a for all available options. # Blast against nt virus database.