diff --git a/.Rbuildignore b/.Rbuildignore
deleted file mode 100644
index e13c405..0000000
--- a/.Rbuildignore
+++ /dev/null
@@ -1,3 +0,0 @@
-^.*\.Rproj$
-^\.Rproj\.user$
-^LICENSE\.md$
diff --git a/.travis.yaml b/.travis.yaml
deleted file mode 100644
index 9509c51..0000000
--- a/.travis.yaml
+++ /dev/null
@@ -1,26 +0,0 @@
-language: python
-python:
-  # We don't actually use the Travis Python, but this keeps it organized.
-  - "3.6"
-
-install:
-  - sudo apt-get update
-  - wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh;
-  - bash miniconda.sh -b -p $HOME/miniconda
-  - export PATH="$HOME/miniconda/bin:$PATH"
-  - hash -r
-  - conda config --set always_yes yes --set changeps1 no
-  - conda update -q conda
-  # Useful for debugging any issues with conda
-  - conda info -a
-  - conda config --add channels defaults
-  - conda config --add channels conda-forge
-  - conda config --add channels bioconda
-  - ls -ls
-  - conda env create -f envs/environment.yml
-  - conda info --envs
-
-script:
-  - source activate virome
-  # run the workflow
-  - snakemake --use-conda
diff --git a/DESCRIPTION b/DESCRIPTION
deleted file mode 100644
index a9fc8f6..0000000
--- a/DESCRIPTION
+++ /dev/null
@@ -1,11 +0,0 @@
-Package: vs
-Title: Replicate VirusSeeker Pipeline
-Version: 0.0.0.9000
-Authors@R: person("Taavi", "Päll", email = "taavi.pall@ut.ee", role = c("aut", "cre"))
-Description: Replicates VirusSeeker pipeline to characterise the type and abundance of both known and novel viral sequences in metagenomic datasets.
-Depends: R (>= 3.4.3)
-License: MIT + file LICENSE
-Encoding: UTF-8
-LazyData: true
-URL: https://github.com/tpall/vs
-BugReports: https://github.com/tpall/vs/issues
diff --git a/vs.Rproj b/vs.Rproj
deleted file mode 100644
index a06cd8e..0000000
--- a/vs.Rproj
+++ /dev/null
@@ -1,18 +0,0 @@
-Version: 1.0
-
-RestoreWorkspace: No
-SaveWorkspace: No
-AlwaysSaveHistory: Default
-
-EnableCodeIndexing: Yes
-UseSpacesForTab: Yes
-NumSpacesForTab: 2
-Encoding: UTF-8
-
-RnwWeave: knitr
-LaTeX: pdfLaTeX
-
-AutoAppendNewline: Yes
-StripTrailingWhitespace: Yes
-
-BuildType: None