instructions.Rmd

<div style="font-family: 'Arial', sans-serif; color: #2c3e50;">
  <h1 style="font-size: 36px; font-weight: bold; margin-bottom: 20px;">Welcome to DR-scRNAseq!</h1>
  <p style="font-size: 18px; margin-bottom: 20px;">
    Follow these steps to process and analyze your single-cell RNA sequencing data.
  </p>
</div>


-   Generate your Seurat object using **Upload and Convert**
    - Upload your .h5 or .gz file
    - Press the `Convert` button to perform the conversion
    - Download your Seurat object
-   Perform pre-processing on your Seurat object using **Analyze and Process**
    - Upload your .rds file and specify the desired values and parameters to be used
    - Press the `Process` button to run the analysis.
    - Download your pre-processed Seurat object
-   Perform dimensionality reduction on your pre-processed Seurat object using **Plot and Explore**
    - Upload your pre-processed .rds file and specify the desired dimensionality reduction algorithm
    - Press the `Run` button to execute the dimensionality reduction and create the plots
    - 2 tabs will appear with data that you can explore
    - There will be option to download your plots