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I am getting the following error when trying to run this ComplexHeatmap function:
Heatmap(angiogenesis_data,
name = "Expression",
cluster_columns = TRUE,
cluster_rows = TRUE,
clustering_distance_columns = "pearson",
row_names_gp = gpar(fontsize = 7),
show_column_names = TRUE,
column_names_gp = gpar(fontsize = 5))
Error:
Error in getFromNamespace(device_info[3], ns = device_info[2])(temp_image) : unable to open /var/folders/qn/nq5n86wj0z73818p74mm53200000gn/T//RtmpgIg94o/.heatmap_body_0b25b19cfb10757606876199a410c57f_1_1f5266851ee6c.png
Hi,
I am getting the following error when trying to run this ComplexHeatmap function:
Heatmap(angiogenesis_data,
name = "Expression",
cluster_columns = TRUE,
cluster_rows = TRUE,
clustering_distance_columns = "pearson",
row_names_gp = gpar(fontsize = 7),
show_column_names = TRUE,
column_names_gp = gpar(fontsize = 5))
Error:
Error in getFromNamespace(device_info[3], ns = device_info[2])(temp_image) : unable to open /var/folders/qn/nq5n86wj0z73818p74mm53200000gn/T//RtmpgIg94o/.heatmap_body_0b25b19cfb10757606876199a410c57f_1_1f5266851ee6c.png
Traceback:
| getFromNamespace(device_info[3], ns = device_info[2])(temp_image)
| .local(object, ...)
| draw_heatmap_body(object, kr = i, kc = j, x = slice_x[j], y = slice_y[i], width = slice_width[j], height = slice_height[i], just = c("left", "top"))
draw_heatmap_body(object, kr = i, kc = j, x = slice_x[j], y = slice_y[i], width = slice_width[j], height = slice_height[i], just = c("left", "top"))
| ht_graphic_fun_list[j]
17..local(object, ...)
16.draw(ht, internal = TRUE)
| draw(ht, internal = TRUE)
| .local(object, ...)
| draw_heatmap_list(object)
| draw_heatmap_list(object)
| ht_graphic_fun_list[j]
eval(code)
eval(code)
| .local(object, ...)
draw(ht_list, ...)
draw(ht_list, ...)
| .local(object, ...)
draw(object)
draw(object)
(new("standardGeneric", .Data = function (object)
standardGeneric("show"), generic = structure("show", package = "methods"),
package = "methods", group = list(), valueClass = character(0),
signature = structure("object", simpleOnly = TRUE), default = new("derivedDefaultMethod", ...
| (new("standardGeneric", .Data = function (object)
I tried to set a new temporary directory but it didn't work. Please let me know if you could provide any help. Thanks so much!
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