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Issue with ComplexHeatmap #1217

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pzavras opened this issue Nov 6, 2024 · 0 comments
Open

Issue with ComplexHeatmap #1217

pzavras opened this issue Nov 6, 2024 · 0 comments

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@pzavras
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pzavras commented Nov 6, 2024

Hi,

I am getting the following error when trying to run this ComplexHeatmap function:
Heatmap(angiogenesis_data,
name = "Expression",
cluster_columns = TRUE,
cluster_rows = TRUE,
clustering_distance_columns = "pearson",
row_names_gp = gpar(fontsize = 7),
show_column_names = TRUE,
column_names_gp = gpar(fontsize = 5))

Error:
Error in getFromNamespace(device_info[3], ns = device_info[2])(temp_image) : unable to open /var/folders/qn/nq5n86wj0z73818p74mm53200000gn/T//RtmpgIg94o/.heatmap_body_0b25b19cfb10757606876199a410c57f_1_1f5266851ee6c.png

Traceback:

  1. | getFromNamespace(device_info[3], ns = device_info[2])(temp_image)

  2. | .local(object, ...)

  3. | draw_heatmap_body(object, kr = i, kc = j, x = slice_x[j], y = slice_y[i], width = slice_width[j], height = slice_height[i], just = c("left", "top"))

  4. draw_heatmap_body(object, kr = i, kc = j, x = slice_x[j], y = slice_y[i], width = slice_width[j], height = slice_height[i], just = c("left", "top"))

  5. | ht_graphic_fun_list[j]

17..local(object, ...)

16.draw(ht, internal = TRUE)

  1. | draw(ht, internal = TRUE)

  2. | .local(object, ...)

  3. | draw_heatmap_list(object)

  4. | draw_heatmap_list(object)

  5. | ht_graphic_fun_list[j]

  6. eval(code)

  7. eval(code)

  8. | .local(object, ...)

  9. draw(ht_list, ...)

  10. draw(ht_list, ...)

  11. | .local(object, ...)

  12. draw(object)

  13. draw(object)

  14. (new("standardGeneric", .Data = function (object)
    standardGeneric("show"), generic = structure("show", package = "methods"),
    package = "methods", group = list(), valueClass = character(0),
    signature = structure("object", simpleOnly = TRUE), default = new("derivedDefaultMethod", ...

  15. | (new("standardGeneric", .Data = function (object)

I tried to set a new temporary directory but it didn't work. Please let me know if you could provide any help. Thanks so much!

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