The Umap map is out of order

[Accompany0313]

Hi Zhang，
Nice work!

I'm having a problem with out-of-order images. But my filelist is in the same order as the cell types in the label_info.pickle file. I would like to ask you why this situation is caused?

Could you please help me with it? Thank you so much!

[ruochiz]

Sorry for the confusion.
Do this instead:

embedding = model.fetch_cell_embedding(final_dim=256,
	                               restore_order=True)

as explained here: https://github.com/ma-compbio/Higashi/wiki/Fast-Higashi-Usage#get-the-results