Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Run on singularity / without logging into container #35

Open
Shellfishgene opened this issue Sep 6, 2019 · 0 comments
Open

Run on singularity / without logging into container #35

Shellfishgene opened this issue Sep 6, 2019 · 0 comments

Comments

@Shellfishgene
Copy link

Hi!
I would like to try ORP on our cluster, but we only have singularity available. I converted the Docker image, and it works to some extent. However using singularity shell orp.sif does not work quite like docker: I have both file systems available and it wants to load conda envs from the host, also $HOME points to the host /home. How would I start this in Singularity so it acts the same as in Docker? singularity exec orp.sif bash has the same problem.

And also to run it on the cluster I would have to start ORP non interactively from a shell script, how would that look?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant