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Raw Expression Information Unavailable for GDSC1 & 2 #332

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SyedA5688 opened this issue Nov 25, 2024 · 1 comment
Open

Raw Expression Information Unavailable for GDSC1 & 2 #332

SyedA5688 opened this issue Nov 25, 2024 · 1 comment

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@SyedA5688
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Thank you for the great benchmarking platform!

I am currently trying to use the GDSC 1 and 2 datasets for drug sensitivity prediction, however I am having trouble locating the raw, unnormalized expression of the cell lines. I see that the normalized expression is available through the TDC API - is the raw expression available anywhere? Thank you in advance!
@abearab
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abearab commented Nov 25, 2024

maybe here? https://www.cancerrxgene.org/downloads/bulk_download

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@abearab @SyedA5688