v1.8.3

Note that this is the last ROBOT release that supports Java 8. In future releases of ROBOT the minimum required version is Java 11.

Changed

• Replace log4j with logback #948 #953

Fixed

• Fix custom report queries #944
• Fix methods in Report object for ROBOT as a library #951

v1.8.2

Added

• Add links to query documentation for default rules in report #879
• Ability to restrict report to base ontology #872
• Add check for equivalent class with no genus to report #865
• Add check for illegal use of built-in vocabulary #867
• Add check for misused replaced-by annotation #869
• Add checks for undeclared synonymtype and subsettype #870
• Inferred axiom generators for domains and ranges #931

Changed

• Split equivalent class check #856
• Allow Dublin Core "terms" namespace (http://purl.org/dc/terms/) for description and title properties on ontology. #741
• Allow numbers in lowercase_definition check #866
• Blank nodes in report are now referred to as blank node rather than a random identifier #873
• Change behaviour of template --errors option without --force #929
• Fail hard on bad reason --equivalent-classes-allowed argument #938

Fixed

• Fix printing violations in report #823
• Fix handling of rdf:type in export #834
• Fix missing annotations from export #850
• Fail on unknown rule names in report #858
• Fix behaviour of --preserve-structure when using internal or external axiom selectors for remove or filter #816
• Fix duplicate_label_synonym #864
• Fix value rendering for entities in report #874
• Fix OBO serialisation issues when using --check false #896
• Fix merge --inputs patterns with parent directories #899
• Fix deprecated_class_reference report query #902
• Fix error handling for JSON conversion #907
• Fix handling of property chains when removing/filtering base axioms in #914
• Fix SPLIT unpacking in named individuals in template #924

Changed

• Do not allow malformed IRIs to be returned by IOHelper #882

v1.8.1

Fixed

• Fix handling of class expressions from template #808

v1.8.0

Added

• Add measure command #774
• Added 'strict' mode for loading ontologies in #788
• Add --allow-missing-entities option in rename command #793
• Add html-list format option to export in #703

Changed

• Explanations for inconsistent and unsatisfiable classes in explain #779

Fixed

• Allow case-insensitive "SubClasses" in export header #802

v1.7.2

This release just fixes some bugs.

Changed

• Update to whelk 1.0.4

Fixed

• Fix blank node subjects in report in #767

v1.7.1

This release includes some small improvements and fixes.

Added

• Add Whelk OWL reasoner in #730
• Add --errors <path> option to template in #713
• Add new formats to report: HTML, JSON, and XLSX #699
• Add --fail-on-violation <bool> option to verify in #738

Fixed

• Handle empty template property charactersitics in #719
• Fix referencing properties by CURIE in export in #722
• Fix equivalent class rendering for template in #728
• Fix ontology IRI rendering for report in #739

v1.7.0

This release adds the export command and several fixes.

Added

• Add export command #481
• Add JSON format to export in #645
• Add Excel format to export in #646
• Add --create-tdb <true/false> option to query in #685

Changed

• Updated obographs from 0.0.8 to 0.2.1 #657

Fixed

• Fix filtering axioms with multiple axiom selectors #644
• Fix comparator method for sorting empty strings with export in #654
• Fix releasing dataset after exception when running report with --tdb true #659
• Reduced time spent loading datasets for query in #666
• Fix writing JSON format to use OutputStream with 'convert' in #671
• Fix IRI resolution for template in #689
• Fix MIREOT extract on overlapping class/individual entity for #709 in #710
• Fix issue with --add-prefixes option in #715

v1.6.0

This release adds the collapse command, and a few other improvements and fixes.

Added

• Add collapse command #578
• Add support for anonymous class assertions in template #630
• Add maven plugin to update OBO context #608
• Add more efficient mode for reduce when only considering named classes #619

Changed

• Switch whitespace queries to regex #606
• Update nucleus import for tests #597

Fixed

• Fix warning when term is in imports (extract command) #625
• Fix index out of bounds error in extract #617
• Use URIs to fix resource path issues #603

v1.5.0

This release includes the new python command, allowing ROBOT to be controlled from Python using Py4j.

Other new features include:

• internal/external selectors for remove/filter (#570)
• language selectors for remove/filter (#574)
• tautologies and structural-tautologies selectors for remove/filter(#579)
• catalog options for right-side of diff (#584)

And there have been some minor bug fixes.

v1.4.3

This release addresses excessive logging (see #567 and #374).