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    31 repositories

    • cytosense_to_ecotaxa_pipeline

      Public
      Generate TSV file for Ecotaxa from Cytosense CYZ file
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 9, 2025Jan 9, 2025

    • cyz2json

      Public
      Convert CytoBuoy CYZ format flow cytometry data to a JSON representation.
      C#
      •
      Other
      •2•0•0•0•Updated Jan 8, 2025Jan 8, 2025

    • ecotaxa_front

      Public
      Front end of the EcoTaxa application
      JavaScript
      •
      Other
      •6•6•86•7•Updated Jan 8, 2025Jan 8, 2025

    • ecotaxa_back

      Public
      Backend of the EcoTaxa application
      Python
      •
      GNU General Public License v3.0
      •5•6•16•11•Updated Jan 8, 2025Jan 8, 2025

    • ecopart_back

      Public
      Backend of EcoPart application
      TypeScript
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 7, 2025Jan 7, 2025

    • ecopart

      Public
      A web application dedicated to particle data from UVP and LISST.
      JavaScript
      •
      Other
      •1•0•48•0•Updated Dec 20, 2024Dec 20, 2024

    • ZQC

      Public
      Python
      •0•1•0•0•Updated Dec 19, 2024Dec 19, 2024

    • ZooProcess-back

      Public
      JavaScript
      •0•0•0•0•Updated Dec 16, 2024Dec 16, 2024

    • pyecotaxa

      Public
      Python package to query EcoTaxa and process its output
      Python
      •
      GNU General Public License v3.0
      •3•4•2•1•Updated Oct 18, 2024Oct 18, 2024

    • ecotaxarapi

      Public
      R package to access EcoTaxa's API
      R
      •1•2•0•0•Updated Oct 17, 2024Oct 17, 2024

    • DEEP-OC-multi_plankton_separation

      Public
      Dockerfile
      •
      MIT License
      •3•1•0•0•Updated Oct 2, 2024Oct 2, 2024

    • ZooProcess-front

      Public
      ZooProcess for ZooScan by COMPLEx - LOV - IMEV (front part)
      TypeScript
      •
      MIT License
      •0•0•0•0•Updated Sep 24, 2024Sep 24, 2024

    • ecotaxoserver

      Public
      Taxonomy server for EcoTaxa
      JavaScript
      •
      Other
      •2•1•13•8•Updated Sep 18, 2024Sep 18, 2024

    • zooprocess-multiple-classifier

      Public
      A module using the DEEPaaS API to differentiate images containing multiple zooplankton objects from those containing only one object
      Python
      •
      GNU Affero General Public License v3.0
      •1•0•0•0•Updated Aug 11, 2024Aug 11, 2024

    • UVP_toolboxpy

      Public
      Provides usefull python tools to process UVP data and metadata
      Python
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Aug 7, 2024Aug 7, 2024

    • ZooProcess-python

      Public
      Python
      •0•0•0•0•Updated Aug 2, 2024Aug 2, 2024

    • multi_plankton_classification

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Jul 12, 2024Jul 12, 2024

    • multi_plankton_separation

      Public
      Python
      •
      MIT License
      •1•1•0•0•Updated Jul 11, 2024Jul 11, 2024

    • ecotaxa_py_client

      Public
      Python
      •2•7•1•0•Updated Jul 8, 2024Jul 8, 2024

    • DEEP-OC-multi_plankton_classification

      Public
      Dockerfile
      •
      MIT License
      •0•0•0•0•Updated Jul 5, 2024Jul 5, 2024

    • UVP_toolbox

      Public
      Provides usefull MATLAB tools to process UVP data and metadata
      MATLAB
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Apr 30, 2024Apr 30, 2024

    • ecotaxa_ML_template

      Public
      Functional example of the ML pipeline in EcoTaxa.
      Python
      •3•10•0•0•Updated Apr 17, 2024Apr 17, 2024

    • uvpec

      Public
      Underwater Vision Profiler Embedded Classifier
      Python
      •
      GNU General Public License v3.0
      •2•4•0•0•Updated Feb 22, 2024Feb 22, 2024

    • zqc_launcher

      Public
      HTML
      •0•0•0•0•Updated Jan 18, 2024Jan 18, 2024

    • ecotaxa_pipeline

      Public
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Jan 13, 2024Jan 13, 2024

    • ecotaxar

      Public
      An R package to access data from EcoTaxa.
      R
      •3•2•1•0•Updated Dec 29, 2023Dec 29, 2023

    • ZooProcessV10-Front-Material-kit-trial

      Public
      ZooProcess V10 for ZooScan by COMPLEx - LOV - IMEV
      JavaScript
      •
      MIT License
      •2.5k•0•0•0•Updated Oct 26, 2023Oct 26, 2023

    • cpicsprocess

      Public
      Independant app for uploading CPICS data into EcoTaxa
      GNU General Public License v3.0
      •0•2•0•0•Updated May 31, 2023May 31, 2023

    • EcotaxaTools

      Public
      A variety of tools that Alex Barth uses to processing data from EcoTaxa
      R
      •
      Other
      •2•0•0•0•Updated Nov 21, 2022Nov 21, 2022

    • ecotaxoguide

      Public
      Taxonomy guide for EcoTaxa
      HTML
      •
      GNU General Public License v2.0
      •0•0•1•0•Updated Apr 20, 2022Apr 20, 2022