diff --git a/.github/workflows/github-actions.yaml b/.github/workflows/github-actions.yaml index 4ad8ae4..e0b6590 100644 --- a/.github/workflows/github-actions.yaml +++ b/.github/workflows/github-actions.yaml @@ -27,7 +27,7 @@ jobs: run: | sudo apt-get update sudo apt-get install samtools bowtie2 mash bcftools ncbi-blast+ seqtk libcurl4-openssl-dev libssl-dev ca-certificates -y - sudo apt-get install python3-pip python3-dev python3-pandas python3-requests python-biopython -y + sudo apt-get install python3-pip python3-dev python3-pandas python3-requests python3-biopython -y python3 -m pip install --upgrade pip setuptools pip3 install pytest if [ -f requirements.txt ]; then