pyproject.toml

[build-system]
requires = ["setuptools>=65", "setuptools_scm[toml]>=3.4"]
build-backend = "setuptools.build_meta"

[project]
name = "naibr"
authors = [
    {name = "Rebecca Elyanow"},
    {name = "Pontus Höjer"},
]
description = "Identifies novel adjacencies created by structural variations using linked-read data"
requires-python = ">=3.7"
readme = {file = "README.md", content-type = "text/markdown"}
license = {text = "MIT"}
dependencies = [
    "pysam>=0.15.0",
    "mpmath",
    "numpy",
    "scipy",
    "matplotlib",
]
dynamic = ["version"]

[tool.setuptools]
script-files = ["scripts/bedpe_to_vcf.py"]

[tool.setuptools.packages.find]
where = ["src"]

[project.scripts]
naibr = "naibr.__main__:main"

[project.optional-dependencies]
test = ["pytest"]

[tool.setuptools_scm]

[project.urls]
Homepage = "https://github.com/pontushojer/NAIBR"

[tool.pytest.ini_options]
testpaths = ["tests"]

[tool.black]
line_length=110