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Installation error #13

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Jigyasa3 opened this issue Oct 30, 2024 · 1 comment
Open

Installation error #13

Jigyasa3 opened this issue Oct 30, 2024 · 1 comment

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@Jigyasa3
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Hi @rcedgar ,

Thank you for a great tool! I am trying to install the software but am getting the following error. Do you have any suggestions?

#code used-
cd src/; chmod +x build_linux_x86.bash ; ./build_linux_x86.bash

#output-

binary=reseek
"e54d5ca"
gitver.txt done.
clean done.
Makefile done.
mkdir -p o/
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/abcxyz.o abcxyz.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/alignselfrev.o alignselfrev.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/alpha.o alpha.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/alpha2.o alpha2.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/b62.o b62.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/bcadata.o bcadata.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/blosum.o blosum.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/blosum62.o blosum62.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/calibrate.o calibrate.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/calibrate2.o calibrate2.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/calibrate3.o calibrate3.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/calibrate4.o calibrate4.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/calibrate5.o calibrate5.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/calibrate5a.o calibrate5a.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/calibrate7.o calibrate7.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/calibratesearcher.o calibratesearcher.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/calibrate_masm.o calibrate_masm.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/chainreader2.o chainreader2.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/cif.o cif.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/cigar.o cigar.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/cluster.o cluster.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/cmprof.o cmprof.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/cmprof_train.o cmprof_train.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/convert.o convert.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/daliscorer.o daliscorer.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/daliscore_msas2.o daliscore_msas2.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/daliscore_msa.o daliscore_msa.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/daliscore_msas.o daliscore_msas.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/daliscore_tsv.o daliscore_tsv.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/distmx.o distmx.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/evalue_report.o evalue_report.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/explore1.o explore1.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/lddt.o lddt.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/lddt_foldmason.o lddt_foldmason.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/lddt_msa.o lddt_msa.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/lddt_msas.o lddt_msas.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/lddt_msa_foldmason.o lddt_msa_foldmason.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/lddt_muscle.o lddt_muscle.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/msta_lddtmuw1.o msta_lddtmuw1.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/msta_lddtmuw.o msta_lddtmuw.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/msta_score.o msta_score.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/msta_scores.o msta_scores.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/mu_mapping.o mu_mapping.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/alignpair.o alignpair.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/profileloader.o profileloader.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/md5.o md5.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/pdbchaincal.o pdbchaincal.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/pdbfilescanner.o pdbfilescanner.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/gumbel.o gumbel.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/gzipfileio.o gzipfileio.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/linereader2.o linereader2.cpp
g++    -ffast-math -march=native -O3 -DNDEBUG -fopenmp  -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/parasail.o parasail.cpp
make done.
ls: cannot access '../bin/reseek': No such file or directory
@rcedgar
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rcedgar commented Oct 30, 2024

Please post make.stderr here

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