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Bug: Variant gets normal_artifact Filter by Mutect2 #16

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berntpopp opened this issue Aug 1, 2024 · 0 comments

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berntpopp commented Aug 1, 2024

The Variant

APA53 T: ATP1A1; L104R
chr1-116387415-T-G

get the normal_artifact flag by MuTect2

Change the relevant setting: https://gatk.broadinstitute.org/hc/en-us/community/posts/4585949910939-Excessive-filtering-with-normal-artifact-in-FilterMutectCalls

berntpopp added the bug label

berntpopp self-assigned this

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