setup.py

# File: variantcentrifuge/setup.py
# Location: variantcentrifuge/variantcentrifuge/setup.py
"""
Setup script for variantcentrifuge.

This file configures how the package is built, installed, and what
dependencies are required.
"""

import os
from setuptools import setup, find_packages

# Load version from version.py without importing the module
version = {}
with open(os.path.join('variantcentrifuge', 'version.py')) as f:
    exec(f.read(), version)

# Read the README for the long description
this_dir = os.path.abspath(os.path.dirname(__file__))
with open(os.path.join(this_dir, "README.md"), encoding="utf-8") as f:
    long_description = f.read()

setup(
    name="variantcentrifuge",
    version=version['__version__'],
    description="A tool to filter, extract, and analyze variants from VCF files.",
    long_description=long_description,
    long_description_content_type="text/markdown",
    author="Bernt Popp",
    author_email="bernt.popp.md@gmail.com",
    url="https://github.com/scholl-lab/variantcentrifuge",
    packages=find_packages(),
    python_requires=">=3.7",
    install_requires=[
        "pandas",
        "jinja2",
    ],
    entry_points={
        "console_scripts": [
            "variantcentrifuge=variantcentrifuge.cli:main"
        ]
    },
    include_package_data=True,
    package_data={
        "variantcentrifuge": ["config.json"]
    },
    classifiers=[
        "Programming Language :: Python :: 3",
        "License :: OSI Approved :: MIT License",
        "Operating System :: POSIX :: Linux",
    ],
)