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lessons.html
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---
layout: base
root: .
title: Lessons
---
<div class="row">
<div class="col-sm-2"></div>
<div class="col-sm-8" align="center">
<p>
All of our lessons are freely available under
the <a href="{{page.root}}/license.html#cc-by">Creative Commons - Attribution License</a>.
<br/>
You may re-use and re-mix the material in any way you wish,
without asking permission,
<br/>
provided you cite us as the original source
(e.g., provide a link back to this website).
</p>
</div>
<div class="col-sm-2"></div>
</div>
<div class="row">
<div class="col-sm-6">
<h2 id="v5.3">Version 5.3</h2>
<p>
This is what we currently teach,
broken out into one lesson per repository.
You can check the status of each lesson on
<a href="{{page.root}}/pages/dashboard.html">our dashboard</a>,
or view the <a href="http://scf.rgaiacs.com/nightly/">nightly build</a>.
</p>
<table class="table table-striped">
<tr>
<td>The Unix Shell</td>
<td><a href="{{site.github_url}}/shell-novice">repo</a></td>
<td><a href="{{site.github_io_url}}/shell-novice">site</a></td>
<td><a href="{{site.github_io_url}}/shell-novice/reference.html">reference</a></td>
</tr>
<tr>
<td>Version Control with Git</td>
<td><a href="{{site.github_url}}/git-novice">repo</a></td>
<td><a href="{{site.github_io_url}}/git-novice">site</a></td>
<td><a href="{{site.github_io_url}}/git-novice/reference.html">reference</a></td>
</tr>
<tr>
<td>Version Control with Mercurial</td>
<td><a href="{{site.github_url}}/hg-novice">repo</a></td>
<td><a href="{{site.github_io_url}}/hg-novice">site</a></td>
<td><a href="{{site.github_io_url}}/hg-novice/reference.html">reference</a></td>
</tr>
<tr>
<td>Using Databases and SQL</td>
<td><a href="{{site.github_url}}/sql-novice-survey">repo</a></td>
<td><a href="{{site.github_io_url}}/sql-novice-survey">site</a></td>
<td><a href="{{site.github_io_url}}/sql-novice-survey/reference.html">reference</a></td>
</tr>
<tr>
<td>Programming with Python <a href="#python27">*</a></td>
<td><a href="{{site.github_url}}/python-novice-inflammation">repo</a></td>
<td><a href="{{site.github_io_url}}/python-novice-inflammation">site</a></td>
<td><a href="{{site.github_io_url}}/python-novice-inflammation/reference.html">reference</a></td>
</tr>
<tr>
<td>Programming with R</td>
<td><a href="{{site.github_url}}/r-novice-inflammation">repo</a></td>
<td><a href="{{site.github_io_url}}/r-novice-inflammation">site</a></td>
<td><a href="{{site.github_io_url}}/r-novice-inflammation/reference.html">reference</a></td>
</tr>
<tr>
<td>R for Reproducible Scientific Analysis</td>
<td><a href="{{site.github_url}}/r-novice-gapminder">repo</a></td>
<td><a href="{{site.github_io_url}}/r-novice-gapminder">site</a></td>
<td><a href="{{site.github_io_url}}/r-novice-gapminder/reference.html">reference</a></td>
</tr>
<tr>
<td>Programming with MATLAB</td>
<td><a href="{{site.github_url}}/matlab-novice-inflammation">repo</a></td>
<td><a href="{{site.github_io_url}}/matlab-novice-inflammation">site</a></td>
<td><a href="{{site.github_io_url}}/matlab-novice-inflammation/reference.html">reference</a></td>
</tr>
<tr>
<td>Automation and Make</td>
<td><a href="{{site.github_url}}/make-novice">repo</a></td>
<td><a href="{{site.github_io_url}}/make-novice">site</a></td>
<td><a href="{{site.github_io_url}}/make-novice/reference.html">reference</a></td>
</tr>
<tr>
<td>Instructor Training</td>
<td><a href="{{site.github_url}}/instructor-training">repo</a></td>
<td><a href="{{site.github_io_url}}/instructor-training">site</a></td>
<td><a href="{{site.github_io_url}}/instructor-training/reference.html">reference</a></td>
</tr>
</table>
<p id="python27">
* Now using Python 3.
The older lesson using Python 2.7 is available in
<a href="{{site.github_url}}/python-novice-inflammation-2.7">this repository</a>
and <a href="{{site.github_io_url}}/python-novice-inflammation-2.7">this website</a>.
</p>
</div>
<div class="col-sm-6">
<h2 id="capstones">Contributed</h2>
<p>
These lessons have been contributed by community members.
</p>
<table class="table table-striped">
<tr>
<td>Testing and Continuous Integration with Python</td>
<td><a href="https://github.com/katyhuff/python-testing">repo</a></td>
<td><a href="http://katyhuff.github.io/python-testing">site</a></td>
</tr>
<tr>
<td>From Excel to a Database</td>
<td><a href="{{site.github_url}}/capstone-novice-spreadsheet-biblio">repo</a></td>
<td><a href="{{site.github_io_url}}/capstone-novice-spreadsheet-biblio">site</a></td>
</tr>
<tr>
<td>Data Management in the Ocean, Weather and Climate Sciences</td>
<td><a href="http://github.com/DamienIrving/capstone-oceanography">repo</a></td>
<td><a href="http://damienirving.github.io/capstone-oceanography">site</a></td>
</tr>
<tr>
<td>Controlling a Quadcopter With Your Mind</td>
<td><a href="{{site.github_url}}/matlab-novice-capstone-biomed">repo</a></td>
<td><a href="{{site.github_io_url}}/matlab-novice-capstone-biomed">site</a></td>
</tr>
<tr>
<td>Visualizing Your Data on the Web Using D3</td>
<td><a href="https://github.com/isakiko/D3-visualising-data/">repo</a></td>
<td><a href="http://isakiko.github.io/D3-visualising-data/">site</a></td>
</tr>
<tr>
<td>Working With Data on the Web</td>
<td><a href="{{site.github_url}}/web-data-python">repo</a></td>
<td><a href="{{site.github_io_url}}/web-data-python">site</a></td>
</tr>
</table>
</div>
</div>
<div class="row">
<div class="col-sm-6">
<h2 id="maintainers">Maintainers</h2>
<p>
These volunteers keep issues and pull requests moving,
and decide what is and isn't included in particular lessons.
</p>
<table class="table table-striped">
<tr>
<td>Git</td>
<td><a href="{{page.root}}/pages/team.html#gonzalez.ivan">Ivan Gonzalez</a> and <a href="{{page.root}}/pages/team.html#huang.daisie">Daisie Huang</a></td>
</tr>
<tr>
<td>MATLAB</td>
<td><a href="{{page.root}}/pages/team.html#kiral-kornek.isabell">Isabell Kiral-Kornek</a> and <a href="{{page.root}}/pages/team.html#srinath.ashwin">Ashwin Srinath </a></td>
</tr>
<tr>
<td>Mercurial</td>
<td><a href="{{page.root}}/pages/team.html#latornell.d">Doug Latornell</a></td>
</tr>
<tr>
<td>Python</td>
<td><a href="{{page.root}}/pages/team.html#bekolay.trevor">Trevor Bekolay</a> and <a href="{{page.root}}/pages/team.html#bostroem.a">Azalee Bostroem</a></td>
</tr>
<tr>
<td>R</td>
<td><a href="{{page.root}}/pages/team.html#blischak.j">John Blischak</a> and <a href="{{page.root}}/pages/team.html#haine.denis">Denis Haine</a></td>
</tr>
<tr>
<td>SQL</td>
<td><a href="{{page.root}}/pages/team.html#cabunoc.abigail">Abigail Cabunoc</a> and <a href="{{page.root}}/pages/team.html#mckay.sheldon">Sheldon McKay</a></td>
</tr>
<tr>
<td>Unix Shell</td>
<td><a href="{{page.root}}/pages/team.html#devenyi.gabriel">Gabriel Devenyi</a> and <a href="{{page.root}}/pages/team.html#koch.christina">Christina Koch</a></td>
</tr>
<tr>
<td>Automation and Make</td>
<td><a href="{{page.root}}/pages/team.html#jackson.m">Mike Jackson</a></td>
</tr>
<tr>
<td>Instructor Training</td>
<td><a href="{{page.root}}/pages/team.html#wilson.g">Greg Wilson</a></td>
</tr>
<tr>
<td>setup instructions</td>
<td><a href="{{page.root}}/pages/team.html#michonneau.francois">François Michonneau</a></td>
</tr>
<tr>
<td>tools</td>
<td><a href="{{page.root}}/pages/team.html#boughton.andrew">Andy Boughton</a>, <a href="{{page.root}}/pages/team.html#emonet.remi">Rémi Emonet</a>, and <a href="{{page.root}}/pages/team.html#silva.raniere">Raniere Silva</a></td>
</tr>
</table>
</div>
<div class="col-sm-6">
<h2 id="slideshows">Slideshows</h2>
<p>
We are developing some presentations to explain who we are and what we do.
Some of these are animated with <a href="http://third-bit.com/browsercast/">Browsercast</a>,
and all are available in <a href="{{site.github_url}}/slideshows/">this repository</a>.
</p>
<table class="table table-striped">
<tr>
<td><a href="{{site.github_io_url}}/slideshows/introducing-software-carpentry/index.html">Introducing Software Carpentry</a></td>
</tr>
<tr>
<td><a href="{{site.github_io_url}}/slideshows/hosting-workshop/index.html">Hosting a Workshop</a></td>
</tr>
<tr>
<td><a href="{{site.github_io_url}}/slideshows/best-practices/index.html">Best Practices in Scientific Computing</a></td>
</tr>
<tr>
<td><a href="{{site.github_io_url}}/slideshows/lessons-learned/index.html">Software Carpentry: Lessons Learned</a></td>
</tr>
<tr>
<td><a href="{{site.github_io_url}}/slideshows/teaching-tips/index.html">Teaching Tips</a></td>
</tr>
<tr>
<td><a href="{{site.github_io_url}}/slideshows/creating-website/index.html">Creating a Workshop Website</a></td>
</tr>
<tr>
<td><a href="{{site.github_io_url}}/slideshows/creating-lesson/index.html">Creating a Lesson</a></td>
</tr>
</table>
</div>
</div>
<h2 id="v4">Version 4</h2>
<p>
This material was created in 2010-11,
and is now in maintenance mode.
<br/>
<a href="{{site.github_url}}/v4">View source on GitHub</a>
</p>
<div class="row">
<div class="col-sm-6">
<table class="table table-striped">
<tr>
<td><a href="{{site.github_io_url}}/v4/vc/index.html">Using Subversion</a></td>
</tr>
<tr>
<td><a href="{{site.github_io_url}}/v4/shell/index.html">The Unix Shell</a></td>
</tr>
<tr>
<td><a href="{{site.github_io_url}}/v4/python/index.html">Programming in Python</a></td>
</tr>
<tr>
<td><a href="{{site.github_io_url}}/v4/test/index.html">Testing</a></td>
</tr>
<tr>
<td><a href="{{site.github_io_url}}/v4/setdict/index.html">Sets and Dictionaries</a></td>
</tr>
<tr>
<td><a href="{{site.github_io_url}}/v4/regexp/index.html">Regular Expressions</a></td>
</tr>
<tr>
<td><a href="{{site.github_io_url}}/v4/databases/index.html">Databases</a></td>
</tr>
<tr>
<td><a href="{{site.github_io_url}}/v4/access/index.html">Using Access</a></td>
</tr>
<tr>
<td><a href="{{site.github_io_url}}/v4/data/index.html">Data Management</a></td>
</tr>
<tr>
<td><a href="{{site.github_io_url}}/v4/oop/index.html">Object-Oriented Programming</a></td>
</tr>
</table>
</div>
<div class="col-sm-6">
<table class="table table-striped">
<tr>
<td><a href="{{site.github_io_url}}/v4/invperc/index.html">Program Design</a></td>
</tr>
<tr>
<td><a href="{{site.github_io_url}}/v4/make/index.html">Make</a></td>
</tr>
<tr>
<td><a href="{{site.github_io_url}}/v4/sysprog/index.html">Systems Programming</a></td>
</tr>
<tr>
<td><a href="{{site.github_io_url}}/v4/spreadsheets/index.html">Spreadsheets</a></td>
</tr>
<tr>
<td><a href="{{site.github_io_url}}/v4/matrix/index.html">Matrix Programming with NumPy</a></td>
</tr>
<tr>
<td><a href="{{site.github_io_url}}/v4/matlab/index.html">MATLAB</a></td>
</tr>
<tr>
<td><a href="{{site.github_io_url}}/v4/media/index.html">Multimedia Programming</a></td>
</tr>
<tr>
<td><a href="{{site.github_io_url}}/v4/softeng/index.html">Software Engineering</a></td>
</tr>
<tr>
<td><a href="{{site.github_io_url}}/v4/essays/index.html">Essays</a></td>
</tr>
</table>
</div>
</div>
<p>
The <strong>Version 3 lessons</strong> (circa 2007)
are also <a href="{{site.github_url}}/v3">available on GitHub</a>.
</p>