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I am learning how to use SPATA and specifically how to plot variables over the sample image. I tried with loading spata object, converting to seurat object and using SpatialDimPlot as follows.
But I got the error "Error in SpatialPlot(object = object, group.by = group.by, images = images, : Could not find any spatial image information". This also happens to a few other samples. Would you mind checking which part of the code I did wrong? If the image is indeed missing, could you kindly point out where I can download the corresponding images?
Thanks,
Jack
The text was updated successfully, but these errors were encountered:
Hi SPATA team,
I am learning how to use SPATA and specifically how to plot variables over the sample image. I tried with loading spata object, converting to seurat object and using SpatialDimPlot as follows.
library(SPATAData)
library(SPATA2)
library(Seurat)
spata_obj <- loadSpataObject("./objects/217_T.RDS")
seurat_obj <- transformSpataToSeurat(object = spata_obj)
SpatialDimPlot(object = seurat_obj,group.by="seurat_clusters")
But I got the error "Error in SpatialPlot(object = object, group.by = group.by, images = images, : Could not find any spatial image information". This also happens to a few other samples. Would you mind checking which part of the code I did wrong? If the image is indeed missing, could you kindly point out where I can download the corresponding images?
Thanks,
Jack
The text was updated successfully, but these errors were encountered: