proportion table

[terooatt]

how can I get the proportion table value that is used to draw the plots?

[WeilerP]

@terooatt, I guess scvelo.core.show_proportions is what you are looking for.

[terooatt]

Hi Philip, thanks for your email. I get the following error: ##### from anndata import AnnData from scvelo.core import show_proportions as _show_proportions

…

---------------------------------------------------------------------------ModuleNotFoundError Traceback (most recent call last)<ipython-input-37-8467b1685ed1> in <module> 7 8 from anndata import AnnData----> 9 from scvelo.core import show_proportions as _show_proportions ModuleNotFoundError: No module named 'scvelo.core' ### print(scvelo.__version__) 0.2.3

On Wed, Oct 6, 2021 at 8:09 PM Philipp Weiler ***@***.***> wrote: @terooatt <https://github.com/terooatt>, I guess scvelo.core.show_proportions is what you are looking for. — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#725 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ADKN6T623CARKAWMVSWVK5LUFQU6LANCNFSM5FOINZNA> . Triage notifications on the go with GitHub Mobile for iOS <https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675> or Android <https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub>.

[WeilerP]

@terooatt, you're using an old version of scvelo. Please update to the newest one or use scvelo.pp.show_proportions. For future references: Please specify the package versions you are using. You can easily do so by running scvelo.logging.print_versions().

[terooatt]

Basically, I'd like to get the proportion values for splice and unspliced read for this data I generated which includes 120 samples. [image: Screen Shot 2021-10-07 at 11.05.27.png]

…

On Thu, Oct 7, 2021 at 10:27 AM TW Terooatea ***@***.***> wrote: Hi Philip, thanks for your email. I get the following error: ##### from anndata import AnnData from scvelo.core import show_proportions as _show_proportions ---------------------------------------------------------------------------ModuleNotFoundError Traceback (most recent call last)<ipython-input-37-8467b1685ed1> in <module> 7 8 from anndata import AnnData----> 9 from scvelo.core import show_proportions as _show_proportions ModuleNotFoundError: No module named 'scvelo.core' ### print(scvelo.__version__) 0.2.3 On Wed, Oct 6, 2021 at 8:09 PM Philipp Weiler ***@***.***> wrote: > @terooatt <https://github.com/terooatt>, I guess > scvelo.core.show_proportions is what you are looking for. > > — > You are receiving this because you were mentioned. > Reply to this email directly, view it on GitHub > <#725 (comment)>, > or unsubscribe > <https://github.com/notifications/unsubscribe-auth/ADKN6T623CARKAWMVSWVK5LUFQU6LANCNFSM5FOINZNA> > . > Triage notifications on the go with GitHub Mobile for iOS > <https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675> > or Android > <https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub>. > >

[terooatt]

Got it, thanks!

…

On Thu, Oct 7, 2021 at 2:39 PM Philipp Weiler ***@***.***> wrote: @terooatt <https://github.com/terooatt>, you're using an old version of scvelo. Please update to the newest or use scvelo.pp.show_utils. For future references: Please specify the package versions you are using. You can easily do so by running scvelo.logging.print_versions(). — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#725 (reply in thread)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ADKN6TZ3ZM6RHPVUHJYONFTUFUXBNANCNFSM5FOINZNA> . Triage notifications on the go with GitHub Mobile for iOS <https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675> or Android <https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub>.