SSPA package no longer available in BioConductor

[shiqing03]

Hi there,

I'm trying to install dependencies and found SSPA is no longer hosted on BioConductor. Could you direct me to where I can download the package? Thank you very much!

Best,
Shiqing

[candidosobrinhosa]

Have you considered downloading the source code and compiling?

You may download the source on bioconductor repository (The .tar.gz file at https://www.bioconductor.org/packages//2.11/bioc/html/SSPA.html) then run a command on R terminal:

$ install.packages(“/home/user/downloads/source.tar.gz”, type=“source”)

[Ivy-ops]

Hi @candidosobrinhosa ,
I have below error in using the code you provided. May I have some advice?
Thanks.

install.packages('SSPA_1.14.2.tar.gz', type="source", repos = NULL)

• installing source package ‘SSPA’ ...
  ** using staged installation
  ** libs
  using C compiler: ‘Apple clang version 15.0.0 (clang-1500.3.9.4)’
  using SDK: ‘’
  clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c massdist.c -o massdist.o
  clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o SSPA.so massdist.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
  installing to /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/00LOCK-SSPA/00new/SSPA/libs
  ** R
  ** inst
  ** byte-compile and prepare package for lazy loading
  Error: object ‘@<-’ is not exported by 'namespace:methods'
  Execution halted
  ERROR: lazy loading failed for package ‘SSPA’
• removing ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/SSPA’
  Warning in install.packages :
  installation of package ‘/Users//Documents/software/SSPA_1.14.2.tar.gz’ had non-zero exit status