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Adding Databases object#339

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crisely09 wants to merge 34 commits intomasterBlueBrain/nexus-forge:masterfrom dev-resourcesBlueBrain/nexus-forge:dev-resourcesCopy head branch name to clipboard

+3,773-31

Commits

Commits on Sep 18, 2023

• Added DatabaseSources to forge.

  crisely09

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  a3e35d8

• Improved DatabaseSource class. Made possible to load mappings from local directory.

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  afd5ba5

• Added option to retrieve mappings from bd_sources also from the forge.

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  f03f941

• Added option to display types of mappings, a model and a store to each DatabaseSource.

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  9ace785

• Updated notebook

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  1da8883

• Did a little clean-up of the notebook

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  9b3c88a

• Change SPARQLStore to Specilized UniProtStore. Added Service and spaql query. Ongoing work.

  crisely09

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  a3e4d74

• Added SPARQLWrapper to dependency list.

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  3e002cd

• Recreated the SPARQLStore, and added the specialized UniProtStore. Still missing to define the search method.

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  47f8b0c

• Modified the search method of the sparql store. Resources are retrieved. Missing mappings.

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  5200b3b

• Updated notebook with search example.

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  a01af1e

• Added a draft of UniProt mappings.

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  8d7bea7

• Make Databases be new archetype. Updated most methods, missing search, sparql, and tests.

  crisely09

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  686aea4

• Adding the missing file.

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  573ae50

• Sorted mapping functions. Missing tests.

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  2520b7f

• Improved Protein mappings.

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  79b44bc

• Implemented mappings methods in RdfModel and update Database classes accordingly.

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  2cfabf3

• Rebased and added unit tests for SPARQLStore and StoreDatabase.

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  a7da898

• Added WebServiceDatabase. Missing tests and improved download methods.

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  b837bc8

• Adding missing file.

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  9433b1f

• Some changes.

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  761e114

• Added DemoDB folder.

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  96c227c

• Make types in db_sources optional

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  ad6b5fd

• Some changes.

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  539c75c

• Added initial unit tests for WebService Database.

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  264ba9a

• Update tests for webservice databases.

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  dd7d22d

• Resolve conflicts with old methods

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  5fd39bc

Commits on Oct 15, 2023

• Merge branch 'master' into dev-resources

  MFSY

  authored
  0f64c3d

Commits on Oct 19, 2023

• Merge branch 'master' into dev-resources

  crisely09

  authored
  d94e5a7

• Add mapper and mapping methods to SPARQL store

  crisely09

  committed
  b26fefc

Commits on Oct 26, 2023

• Merge branch 'master' into dev-resources

  crisely09

  authored
  811ed11

• Small mixes

  crisely09

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  b443b1c

• Add self to tests in classes

  crisely09

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  3c6f952

Commits on Oct 27, 2023

• Merge branch 'master' into dev-resources

  crisely09

  authored
  29b481e