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BradyAJohnston · Nov 4, 2024 · fb03097 · fb03097
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Showing 46 changed files with 5,251 additions and 3,140 deletions.
diff --git a/.nojekyll b/.nojekyll
@@ -0,0 +1 @@
+d0829f40
diff --git a/example_animations.html b/example_animations.html
@@ -2,12 +2,12 @@
 <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>
 
 <meta charset="utf-8">
-<meta name="generator" content="quarto-1.5.57">
+<meta name="generator" content="quarto-1.4.549">
 
 <meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">
 
 
-<title>Examples – Molecular Nodes</title>
+<title>Molecular Nodes - Examples</title>
 <style>
 code{white-space: pre-wrap;}
 span.smallcaps{font-variant: small-caps;}
@@ -33,7 +33,7 @@
 }
 @media print {
 pre > code.sourceCode { white-space: pre-wrap; }
-pre > code.sourceCode > span { display: inline-block; text-indent: -5em; padding-left: 5em; }
+pre > code.sourceCode > span { text-indent: -5em; padding-left: 5em; }
 }
 pre.numberSource code
   { counter-reset: source-line 0; }
@@ -119,7 +119,7 @@
     </a>
   </div>
             <div id="quarto-search" class="" title="Search"></div>
-          <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbarCollapse" aria-controls="navbarCollapse" role="menu" aria-expanded="false" aria-label="Toggle navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
+          <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbarCollapse" aria-controls="navbarCollapse" aria-expanded="false" aria-label="Toggle navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
   <span class="navbar-toggler-icon"></span>
 </button>
           <div class="collapse navbar-collapse" id="navbarCollapse">
@@ -142,7 +142,7 @@
   </li>  
 </ul>
           </div> <!-- /navcollapse -->
-            <div class="quarto-navbar-tools tools-wide">
+          <div class="quarto-navbar-tools tools-wide">
     <a href="https://github.com/BradyAJohnston/MolecularNodes" title="" class="quarto-navigation-tool px-1" aria-label=""><i class="bi bi-github"></i></a>
     <a href="https://twitter.com/bradyajohnston" title="" class="quarto-navigation-tool px-1" aria-label=""><i class="bi bi-twitter"></i></a>
     <a href="https://youtube.com/c/bradyjohnston" title="" class="quarto-navigation-tool px-1" aria-label=""><i class="bi bi-youtube"></i></a>
@@ -464,7 +464,18 @@ <h3 data-number="2.4" class="anchored" data-anchor-id="geometry-nodes"><span cla
     }
     return false;
   }
-  const onCopySuccess = function(e) {
+  const clipboard = new window.ClipboardJS('.code-copy-button', {
+    text: function(trigger) {
+      const codeEl = trigger.previousElementSibling.cloneNode(true);
+      for (const childEl of codeEl.children) {
+        if (isCodeAnnotation(childEl)) {
+          childEl.remove();
+        }
+      }
+      return codeEl.innerText;
+    }
+  });
+  clipboard.on('success', function(e) {
     // button target
     const button = e.trigger;
     // don't keep focus
@@ -496,47 +507,7 @@ <h3 data-number="2.4" class="anchored" data-anchor-id="geometry-nodes"><span cla
     }, 1000);
     // clear code selection
     e.clearSelection();
-  }
-  const getTextToCopy = function(trigger) {
-      const codeEl = trigger.previousElementSibling.cloneNode(true);
-      for (const childEl of codeEl.children) {
-        if (isCodeAnnotation(childEl)) {
-          childEl.remove();
-        }
-      }
-      return codeEl.innerText;
-  }
-  const clipboard = new window.ClipboardJS('.code-copy-button:not([data-in-quarto-modal])', {
-    text: getTextToCopy
   });
-  clipboard.on('success', onCopySuccess);
-  if (window.document.getElementById('quarto-embedded-source-code-modal')) {
-    // For code content inside modals, clipBoardJS needs to be initialized with a container option
-    // TODO: Check when it could be a function (https://github.com/zenorocha/clipboard.js/issues/860)
-    const clipboardModal = new window.ClipboardJS('.code-copy-button[data-in-quarto-modal]', {
-      text: getTextToCopy,
-      container: window.document.getElementById('quarto-embedded-source-code-modal')
-    });
-    clipboardModal.on('success', onCopySuccess);
-  }
-    var localhostRegex = new RegExp(/^(?:http|https):\/\/localhost\:?[0-9]*\//);
-    var mailtoRegex = new RegExp(/^mailto:/);
-      var filterRegex = new RegExp('/' + window.location.host + '/');
-    var isInternal = (href) => {
-        return filterRegex.test(href) || localhostRegex.test(href) || mailtoRegex.test(href);
-    }
-    // Inspect non-navigation links and adorn them if external
- 	var links = window.document.querySelectorAll('a[href]:not(.nav-link):not(.navbar-brand):not(.toc-action):not(.sidebar-link):not(.sidebar-item-toggle):not(.pagination-link):not(.no-external):not([aria-hidden]):not(.dropdown-item):not(.quarto-navigation-tool):not(.about-link)');
-    for (var i=0; i<links.length; i++) {
-      const link = links[i];
-      if (!isInternal(link.href)) {
-        // undo the damage that might have been done by quarto-nav.js in the case of
-        // links that we want to consider external
-        if (link.dataset.originalHref !== undefined) {
-          link.href = link.dataset.originalHref;
-        }
-      }
-    }
   function tippyHover(el, contentFn, onTriggerFn, onUntriggerFn) {
     const config = {
       allowHTML: true,
@@ -571,11 +542,7 @@ <h3 data-number="2.4" class="anchored" data-anchor-id="geometry-nodes"><span cla
       try { href = new URL(href).hash; } catch {}
       const id = href.replace(/^#\/?/, "");
       const note = window.document.getElementById(id);
-      if (note) {
-        return note.innerHTML;
-      } else {
-        return "";
-      }
+      return note.innerHTML;
     });
   }
   const xrefs = window.document.querySelectorAll('a.quarto-xref');