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1. phac-nml/galaxy_tools phac-nml/galaxy_tools Public

   Contains a set of Galaxy Tools mostly written by the Bioinformatics core at NML

   Perl 15 25

2. phac-nml/biohansel phac-nml/biohansel Public

   Rapidly subtype microbial genomes using single-nucleotide variant (SNV) subtyping schemes

   Python 26 7

3. phac-nml/ncov-dehoster phac-nml/ncov-dehoster Public

   Removal of human reads from ncov nanopore sequencing data

   Nextflow 5 4

4. phac-nml/legiovue phac-nml/legiovue Public

   A nextflow pipeline for whole-genome analysis of *Legionella pneumophila*

   Nextflow

5. phac-nml/viralassembly phac-nml/viralassembly Public

   Assemble and QC viral reads with a reference scheme

   Nextflow 1

6. phac-nml/ncov2019-artic-nf phac-nml/ncov2019-artic-nf Public

   Forked from connor-lab/ncov2019-artic-nf

   A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019

   Python 2