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NLP

Named Entity Recognition (NER) - BERT

Slamet Riyanto S.Kom., M.M.S.I.

Dimas Dwi Putra

Architecture

Dataset
View Dataset .csv

Sentence # Word POS Tag
Sentence: 0 studies NNS O
Sentence: 0 on IN O
Sentence: 0 magnesium NN O
Sentence: 0 s NN O
Sentence: 0 mechanism NN O
Sentence: 0 of IN O
Sentence: 0 action NN O
Sentence: 0 in IN O
Sentence: 0 digitalis NN B-plant
Sentence: 0 induced VBD O
Sentence: 0 arrhythmias NNS B-disease
...

Model
View BERT Model

git clone https://huggingface.co/dmis-lab/biobert-v1.1

Eval
View Eval Report .xlsx

Entities precision recall f1-score support Train Batch Size Valid Batch Size Epochs Learning Rate Max Grad Norm execution time
O 96,03% 96,77% 96,40% 4645 8 4 25 0,00001 10 0.20.11
disease 72,49% 64,38% 68,19% 393
plant 81,31% 83,63% 82,46% 281
accuracy 93,68% 93,68% 93,68% 0
macro avg 83,28% 81,59% 82,35% 5319
weighted avg 93,51% 93,68% 93,58% 5319
F-1 Scores 93,68%

Predict

['examination', 'of', 'the', 'data', 'from', 'all', 'ten', 'experiments', 'revealed', 'that', 'complete', 'tumor', 'tumor', 'regression', 'occurred', 'in', '14', 'of', '346', 'papilloma', 'bearing', 'mice', '4', 'that', 'were', 'treated', 'with', 'green', 'green', 'tea', 'tea', 'in', 'the', 'drinking', 'water', 'or', 'with', 'i', 'p', 'injections', 'of', 'green', 'green', 'tea', 'tea', 'constituents', 'whereas', 'none', 'of', 'the', '220', 'papilloma', 'bearing', 'control', 'mice', 'treated', 'with', 'only', 'vehicle', 'exhibited', 'complete', 'tumor', 'tumor']
['O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'disease', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'plant', 'plant', 'plant', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'plant', 'plant', 'plant', 'plant', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'disease', 'disease']

Output

New Pretrained Model BioBert-Plant-Disease

Other Content

Websites Prediction

1. Django Websites Prediction For NER dan RE

Named Entity Recognition (NER)

1. NER Dataset Biomedical Plant-Disease Corpus

2. NER CRF Named Entity Recognition

3. NER BiLSTM Named Entity Recognition

4. NER BERT Named Entity Recognition

5. NER BiLSTM CRF Named Entity Recognition

6. NER BERT BiLSTM CRF Named Entity Recognition

Relation Extraction (RE)

1. RE Dataset Biomedical Plant-Disease Corpus

2. RE BERT Relation Extraction Biomedical

3. RE BiLSTM CRF Relation Extraction Biomedical