NLP

Named Entity Recognition (NER) - BERT

Slamet Riyanto S.Kom., M.M.S.I.

Dimas Dwi Putra

Architecture

Dataset
View Dataset .csv

Sentence #	Word	POS	Tag
Sentence: 0	studies	NNS	O
Sentence: 0	on	IN	O
Sentence: 0	magnesium	NN	O
Sentence: 0	s	NN	O
Sentence: 0	mechanism	NN	O
Sentence: 0	of	IN	O
Sentence: 0	action	NN	O
Sentence: 0	in	IN	O
Sentence: 0	digitalis	NN	B-plant
Sentence: 0	induced	VBD	O
Sentence: 0	arrhythmias	NNS	B-disease
...

Model
View BERT Model

git clone https://huggingface.co/dmis-lab/biobert-v1.1

Eval
View Eval Report .xlsx

Entities	precision	recall	f1-score	support	Train Batch Size	Valid Batch Size	Epochs	Learning Rate	Max Grad Norm	execution time
O	96,03%	96,77%	96,40%	4645	8	4	25	0,00001	10	0.20.11
disease	72,49%	64,38%	68,19%	393
plant	81,31%	83,63%	82,46%	281
accuracy	93,68%	93,68%	93,68%	0
macro avg	83,28%	81,59%	82,35%	5319
weighted avg	93,51%	93,68%	93,58%	5319
F-1 Scores			93,68%

Predict

['examination', 'of', 'the', 'data', 'from', 'all', 'ten', 'experiments', 'revealed', 'that', 'complete', 'tumor', 'tumor', 'regression', 'occurred', 'in', '14', 'of', '346', 'papilloma', 'bearing', 'mice', '4', 'that', 'were', 'treated', 'with', 'green', 'green', 'tea', 'tea', 'in', 'the', 'drinking', 'water', 'or', 'with', 'i', 'p', 'injections', 'of', 'green', 'green', 'tea', 'tea', 'constituents', 'whereas', 'none', 'of', 'the', '220', 'papilloma', 'bearing', 'control', 'mice', 'treated', 'with', 'only', 'vehicle', 'exhibited', 'complete', 'tumor', 'tumor']
['O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'disease', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'plant', 'plant', 'plant', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'plant', 'plant', 'plant', 'plant', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'O', 'disease', 'disease']

Output

New Pretrained Model BioBert-Plant-Disease

Other Content

Websites Prediction

1. Django Websites Prediction For NER dan RE

Named Entity Recognition (NER)

1. NER Dataset Biomedical Plant-Disease Corpus

2. NER CRF Named Entity Recognition

3. NER BiLSTM Named Entity Recognition

4. NER BERT Named Entity Recognition

5. NER BiLSTM CRF Named Entity Recognition

6. NER BERT BiLSTM CRF Named Entity Recognition

Relation Extraction (RE)

1. RE Dataset Biomedical Plant-Disease Corpus

2. RE BERT Relation Extraction Biomedical

3. RE BiLSTM CRF Relation Extraction Biomedical