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Add missing r-dependencies for metadig-rake for 'dataone', 'datapack'…
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… and 'EML' to 'install.packages' statement in R packages docker section
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doulikecookiedough committed Dec 16, 2024
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2 changes: 1 addition & 1 deletion Docker/metadig-worker/Dockerfile
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Expand Up @@ -34,7 +34,7 @@ ENV PATH="$PATH:$JAVA_HOME/bin"

# Install required R packages
RUN echo 'options(repos = c(CRAN = "http://cran.rstudio.com"))' >> /usr/lib/R/etc/Rprofile.site
RUN Rscript -e "install.packages(c('remotes', 'stringr', 'jsonlite'))"
RUN Rscript -e "install.packages(c('remotes', 'stringr', 'jsonlite', 'dataone', 'datapack', 'EML'))"
RUN Rscript -e "remotes::install_github('NCEAS/metadig-r', ref = 'v.0.2.0')"
RUN Rscript -e "remotes::install_github('NCEAS/metadig-rake', ref = 'develop')"

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