v1.4.0
Major changes:
- If given a GATK stand-alone license on the command line, the phone home feature of GATK will be disabled
- Introduced a command-line argument to set how qualimap will treat duplicate reads. Default is to use the duplicates marked by picard.
- Improved build process to include the option to create deployable zip-files
- Removed bundling of sbt version, which means tests depending on the testNG have been disabled.