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Update smoke-tests.yml
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endast committed May 17, 2024
1 parent 9d0806b commit 4c2448a
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions .github/workflows/smoke-tests.yml
Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,6 @@ name: DeepRVAT Pipeline tests
run-name: DeepRVAT Pipeline tests 🧬🧪💻🧑‍🔬
on: [ push ]


jobs:
Smoke-RunTraining:
uses: ./.github/workflows/run-pipeline.yml
Expand All @@ -14,6 +13,7 @@ jobs:
--snakefile ./pipelines/run_training.snakefile --show-failed-logs
Pipeline-Tests-RunTraining:
needs: Smoke-RunTraining
uses: ./.github/workflows/run-pipeline.yml
with:
environment_file: ./deeprvat_env_no_gpu.yml
Expand All @@ -22,4 +22,4 @@ jobs:
prerun_cmd: "sed -i 's/gpus: 1/gpus: 0/' ./example/config.yaml"
pipeline_cmd: |
python -m snakemake -j 2 --directory ./example \
--snakefile ./pipelines/run_training.snakefile --show-failed-logs -F
--snakefile ./pipelines/run_training.snakefile --show-failed-logs -F

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