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@PavlidisLab

Pavlidis lab

The Pavlidis Lab at the University of British Columbia

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  1. neuroexpresso neuroexpresso Public

    📊 Gene expression in neuroexpresso database

    R 18 1

  2. Gemma Gemma Public

    Genomics data re-analysis

    Java 23 6

  3. markerGeneProfile markerGeneProfile Public

    Marker gene profile estimation method used in NeuroExpresso manuscript

    R 14 2

Repositories

Showing 10 of 62 repositories
  • Gemma Public

    Genomics data re-analysis

    PavlidisLab/Gemma’s past year of commit activity
    Java 23 Apache-2.0 6 321 32 Updated Dec 22, 2024
  • TR_singlecell Public
    PavlidisLab/TR_singlecell’s past year of commit activity
    R 0 MIT 0 0 0 Updated Dec 20, 2024
  • ndb Public

    Web application and database providing a harmonized and comprehensive collection of genetic variants published in peer-reviewed literature.

    PavlidisLab/ndb’s past year of commit activity
    Java 4 Apache-2.0 0 19 (1 issue needs help) 1 Updated Dec 12, 2024
  • gemma.R Public

    An R wrapper for the Gemma RESTful API

    PavlidisLab/gemma.R’s past year of commit activity
    R 10 Apache-2.0 1 8 0 Updated Dec 11, 2024
  • pavlab-starter-parent Public

    Curated dependencies for the Pavlidis Lab's Java applications

    PavlidisLab/pavlab-starter-parent’s past year of commit activity
    0 Apache-2.0 0 7 1 Updated Dec 9, 2024
  • rnaseq-pipeline Public

    RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.

    PavlidisLab/rnaseq-pipeline’s past year of commit activity
    Shell 22 Unlicense 4 30 1 Updated Nov 29, 2024
  • baseCode Public

    Data structures, math and statistics tools, and utilities that are often needed across projects.

    PavlidisLab/baseCode’s past year of commit activity
    Java 5 Apache-2.0 0 3 2 Updated Oct 25, 2024
  • TGEMO Public

    The Gemma Ontology

    PavlidisLab/TGEMO’s past year of commit activity
    Python 1 1 3 1 Updated Oct 25, 2024
  • neuroexpresso Public

    📊 Gene expression in neuroexpresso database

    PavlidisLab/neuroexpresso’s past year of commit activity
    R 18 GPL-2.0 1 10 0 Updated Oct 25, 2024
  • ermineR Public

    R wrapper for ermineJ

    PavlidisLab/ermineR’s past year of commit activity
    R 6 4 3 0 Updated Oct 15, 2024
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