update

ShixiangWang · Jul 9, 2023 · 922188e · 922188e
1 parent c0339c8
commit 922188e
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Showing 4 changed files with 8 additions and 5 deletions.
diff --git a/CRAN-SUBMISSION b/CRAN-SUBMISSION
@@ -1,3 +1,3 @@
 Version: 2.2.2
-Date: 2023-07-08 16:43:51 UTC
-SHA: ef74c334a14ee94326db88e14621b798729319d0
+Date: 2023-07-09 02:33:28 UTC
+SHA: c0339c89f4ed05fc486e5fa6f2e312300cf84302
diff --git a/R/sig_auto_extract.R b/R/sig_auto_extract.R
@@ -62,13 +62,14 @@
 #' @export
 #'
 #' @examples
+#' \donttest{
 #' load(system.file("extdata", "toy_copynumber_tally_W.RData",
 #'   package = "sigminer", mustWork = TRUE
 #' ))
 #' res <- sig_auto_extract(cn_tally_W$nmf_matrix, result_prefix = "Test_copynumber", nrun = 1)
 #' # At default, all run files are stored in tempdir()
 #' dir(tempdir(), pattern = "Test_copynumber")
-#' \donttest{
+#' 
 #' laml.maf <- system.file("extdata", "tcga_laml.maf.gz", package = "maftools")
 #' laml <- read_maf(maf = laml.maf)
 #' mt_tally <- sig_tally(

diff --git a/man/sig_auto_extract.Rd b/man/sig_auto_extract.Rd
diff --git a/tests/testthat/test-roxytest-testexamples-sig_auto_extract.R b/tests/testthat/test-roxytest-testexamples-sig_auto_extract.R
@@ -2,7 +2,8 @@
 
 # File R/sig_auto_extract.R: @testexamples
 
-test_that("Function sig_auto_extract() @ L97", {
+test_that("Function sig_auto_extract() @ L98", {
+
 
   load(system.file("extdata", "toy_copynumber_tally_W.RData",
     package = "sigminer", mustWork = TRUE