Code

Implemented lineage only mode#54

Code

Merged

priesgo merged 10 commits intomasterTRON-Bioinformatics/covigator-ngs-pipeline:masterfrom 51_pangolin_only_modeTRON-Bioinformatics/covigator-ngs-pipeline:51_pangolin_only_modeCopy head branch name to clipboardOct 10, 2023

+222-99

Commits

Commits on Sep 28, 2023

• Implemented lineage only mode

  Show description for 9d75700
  johausmann

  committed
  9d75700

Commits on Oct 5, 2023

• Updated pangolin task to accept vcf with caller == input

  Show description for 27386e7
  johausmann

  committed
  27386e7

• Update Makefile

  Show description for 3fa96e2
  johausmann

  authored
  3fa96e2

• Replace whitespace with tab in Makefile

  johausmann

  committed
  7b0482e

• Updated path in test_14.sh

  johausmann

  committed
  5e90601

Commits on Oct 10, 2023

• Update test_15.sh

  Show description for ea09b0b
  johausmann

  authored
  ea09b0b

• Update test_16.sh

  Show description for d41a5f0
  johausmann

  authored
  d41a5f0

• Update test_14.sh

  Show description for 07b3c52
  johausmann

  authored
  07b3c52

• Updated lineage test files and added new VCF file as lofreq VCF gives bcftools errors

  johausmann

  committed
  ce941c1

• Last push did not include updated test scripts

  johausmann

  committed
  16011f7