Release v0.6.7

Added:

• New functionality:
  • CI-SpliceAI parsing and formatting functions with example data and tests
  • IRFinder parsing and filtering functions with example data and tests
  • StringTie parsing and formatting functions
  • SUPPA2 parsing and formatting functions
  • STAR parsing and formatting functions with example data and tests
  • RegTools parsing and formatting functions with example data and tests
• add test for empty CI-SpliceAI input file
• add more global variables to avoid notes in R CMD check

Changed:

• Update CI/CD pipeline for less verbosity during R pkg installations
• Return single-row data.frame for empty input in annotate_mut_effect()
• include 'number_of_supporting_reads` when parsing SplAdder output
• generalize generate_combined_dataset() to multiple inputs
• Update README with list of supported tools
• add option consider_intron_retention to annotate_mut_effect()
• adjust syntax for dplyr >= 1.1.1
• remove rarely used pkgs from Imports
• simplify code in parse_spliceai_thresh()
• minor spell check fixes and doc updates

Fixed:

• fix warnings due to NA's in CI-SpliceAI parsing function
• fix use of generate_combined_dataset() in vignette