fix tests

TRON-Bioinformatics · May 30, 2022 · eda1d47 · eda1d47
1 parent 890e591
commit eda1d47
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/tests/test_10.sh b/tests/test_10.sh
@@ -6,7 +6,7 @@ output=output/test10
 
 nextflow main.nf -profile test,conda --output $output \
 --input_name sample_name \
---input_tumor_bam test_data/SRR8244887.preprocessed.downsampled.bam \
---input_normal_bam test_data/SRR8244836.preprocessed.downsampled.bam
+--input_tumor_bam `pwd`/test_data/SRR8244887.preprocessed.downsampled.bam \
+--input_normal_bam `pwd`/test_data/SRR8244836.preprocessed.downsampled.bam
 
 test -s $output/sample_name/sample_name.mutect2.vcf || { echo "Missing output VCF file!"; exit 1; }