RAxML-NG v0.7.0 BETA

New features

• new support measure: Transfer Bootstrap Expectation (Lemoine et al., Nature 2018) : use --bs-metric tbe
• print AIC/AICc/BIC scores

Minor features and optimizations

• IMPORTANT: site repeats are now enabled by default (in case of problems: add --tip-inner on & please report!)
• improved load balancing: weight sites according to # states and # rate categories (in case of problems: add --extra lb-kassian & please report!)
• thread pinning by default in hybid MPI/pthread mode (--extra thread-nopin to disable)
• remove gap-only & duplicate sequences from the reduced alignment file
• build parsimony trees in master rank only
• check for invalid symbols (spaces,semicolons etc.) in taxon names (problems with Newick)

Bugfixes

• IMPORTANT: --support command was broken in v0.6.0, printing BS support values of 0
• improve base frequency normalization in empirical AA models (#46, thanks to @bredelings )
• increase precision of WAG rates (thanks to @bredelings )
• check for terraces only in --brlen unlinked mode
• fix model optimization with fixed branch lengths (--evaluate --opt-brances off)
• fully resolved/bifurcating constraint tree was ignored (reported by Lois Rancilhac)
• fix overflow in site repeats on very large unpartitioned alignments