Update GW to v1.1.1 (#51426)

* Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update build.sh * Update build.sh * Update meta.yaml * Update conda_build_config.yaml * Update conda_build_config.yaml * Update meta.yaml * Update conda_build_config.yaml * Update build.sh * Update conda_build_config.yaml * Does v1.1.0 build? * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update conda_build_config.yaml * Update conda_build_config.yaml
bioconda · Oct 22, 2024 · 09c5347 · 09c5347
1 parent 496918d
commit 09c5347
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Showing 3 changed files with 25 additions and 10 deletions.
diff --git a/recipes/gw/build.sh b/recipes/gw/build.sh
@@ -2,11 +2,14 @@
 set -e
 
 # Get pre-compiled skia from jetbrains
-USE_GL=1 make prep > /dev/null 2>&1 
+USE_GL=1 make prep 2> /dev/null
 
 if [[ "$OSTYPE" != "darwin"* ]]; then
-  sed -i 's/-lEGL -lGLESv2/-lEGL -lGLESv2 -lGL -lGLX/' Makefile
-  sed -i 's/GLFW_EGL_CONTEXT_API/GLFW_NATIVE_CONTEXT_API/' src/plot_manager.cpp
+  sed -i.bak 's/-lEGL -lGLESv2/-lEGL -lGLESv2 -lGL -lGLX/' Makefile
+  sed -i.bak 's/GLFW_EGL_CONTEXT_API/GLFW_NATIVE_CONTEXT_API/' src/plot_manager.cpp
+  # Let conda set these
+  sed -i.bak 's/-mmacosx-version-min=10.15//g' Makefile
+  sed -i.bak 's/-mmacosx-version-min=11//g' Makefile
 fi
 
 # Set flags conditionally based on the OS type

diff --git a/recipes/gw/conda_build_config.yaml b/recipes/gw/conda_build_config.yaml
@@ -1,4 +1,12 @@
-MACOSX_DEPLOYMENT_TARGET:  # [osx and x86_64]
-  - "10.15"                # [osx and x86_64]
-MACOSX_SDK_VERSION:        # [osx and x86_64]
-  - "10.15"                # [osx and x86_64]
+#MACOSX_DEPLOYMENT_TARGET:  # [osx and x86_64]
+#  - "10.15"                # [osx and x86_64]
+
+#MACOSX_SDK_VERSION:        # [osx and x86_64]
+#  - "10.15"                # [osx and x86_64]
+
+#CFLAGS:
+#  - "-mmacosx-version-min=10.15"  # [osx and x86_64]
+#CXXFLAGS:
+#  - "-mmacosx-version-min=10.15"  # [osx and x86_64]
+#LDFLAGS:
+#  - "-mmacosx-version-min=10.15"  # [osx and x86_64]
diff --git a/recipes/gw/meta.yaml b/recipes/gw/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "1.1.0" %}
-{% set sha256 = "dc96521b8252bde02d9cc68bb3cee156c0469889d2783ee72682338d10657892" %}
+{% set version = "1.1.1" %}
+{% set sha256 = "5ac0430d9179d1a48938f24011c329fe807e72aba0c20eb191c566d129115f86" %}
 
 package:
   name: gw
@@ -31,6 +31,7 @@ build:
     - zlib            # [osx]
     - libuuid
     - libdeflate
+  skip: true  # [osx and x86_64]
 
 requirements:
   build:
@@ -72,7 +73,10 @@ requirements:
 
 test:
   commands:
-    - gw hg19 -b https://github.com/kcleal/gw/releases/download/v1.0.0/demo1.bam -r chr8:37047270-37055161 -n > test.png; ls -lh test.png
+    - which gw && ls -lh $(which gw)
+    - uname -a
+    - if [[ "$(uname)" == "Darwin" ]]; then file $(which gw); otool -L $(which gw); nm $(which gw); fi
+    - gw --version
 
 about:
   home: https://github.com/kcleal/gw